PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc12g099760.1.1
Common NameLOC101256269
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HB-other
Protein Properties Length: 521aa    MW: 58453.3 Da    PI: 6.4197
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc12g099760.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.42.5e-182075257
                        T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
            Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                        + R   t+ qle Le+++++++yp+++++ e A++lgLte+qV+ WF+ rR k+k+
  Solyc12g099760.1.1 20 KARIMKTPAQLEGLEKFYQEHKYPTESMKLEVAQSLGLTEKQVSGWFCHRRLKDKR 75
                        679999************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.0E-19475IPR009057Homeodomain-like
SuperFamilySSF466891.58E-161376IPR009057Homeodomain-like
PROSITE profilePS5007115.8881676IPR001356Homeobox domain
SMARTSM003894.8E-191880IPR001356Homeobox domain
PfamPF000465.4E-162075IPR001356Homeobox domain
CDDcd000868.99E-162075No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MEDSHEIHSE DDKGHVGKLK ARIMKTPAQL EGLEKFYQEH KYPTESMKLE VAQSLGLTEK  60
QVSGWFCHRR LKDKRLSSRE TNAKGRQDRS SGVIQDRGSG FRQDSCGSTK QGDDKYFDHR  120
EVESRRLTGP EVSTADVTRE ADTRYRAESN LMEDTPSGSS SSLRDARFSQ NVESFDMATS  180
RYLPGNEPTD LKCVKPRTGP SGYLKVKAKV ENASITAVKR QLGSLYRQDG PLLGVVFDQL  240
PQGAFESSVQ TPVDDPIYSG EPVPDLTPDF TKVDKRSNSC IGYGSISKIN SHGSDLDGAN  300
LKKSNKSSHP EYYINQKPDR NSSMHNGDRY YLGRNSSIEM RKDSGREVAV DGRCNYKLMA  360
KHDGAANPGS SGGFQSSYIG KVNREQVTAR FTSRDGLSLD IAEEEDLQCK PSNFVHKGSK  420
QHYCPERELS STVEKDYIHV DRPTVDEDYN EDHVKIQWEK EMRVAKRATD EEAPNHQEYV  480
RKASVTRMPS QTNHQISFAA EMSSSFSEDD KTEETSSFED *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.103370.0cell culture| flower| fruit| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc12g099760.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004252889.10.0homeobox-DDT domain protein RLT1-like
TrEMBLA0A3Q7JFP80.0A0A3Q7JFP8_SOLLC; Uncharacterized protein
STRINGSolyc12g099760.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34362242
Representative plantOGRP8823814
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03250.19e-64HB-other family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]