PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc12g099760.1.1

Common Name

LOC101256269

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

HB-other

Protein Properties

Length: 521aa MW: 58453.3 Da PI: 6.4197

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc12g099760.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.4	2.5e-18	20	75	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 + R t+ qle Le+++++++yp+++++ e A++lgLte+qV+ WF+ rR k+k+ Solyc12g099760.1.1 20 KARIMKTPAQLEGLEKFYQEHKYPTESMKLEVAQSLGLTEKQVSGWFCHRRLKDKR 75 679999************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.0E-19	4	75	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.58E-16	13	76	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.888	16	76	IPR001356	Homeobox domain
SMART	SM00389	4.8E-19	18	80	IPR001356	Homeobox domain
Pfam	PF00046	5.4E-16	20	75	IPR001356	Homeobox domain
CDD	cd00086	8.99E-16	20	75	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 521 aa Download sequence Send to blast
MEDSHEIHSE DDKGHVGKLK ARIMKTPAQL EGLEKFYQEH KYPTESMKLE VAQSLGLTEK 60 QVSGWFCHRR LKDKRLSSRE TNAKGRQDRS SGVIQDRGSG FRQDSCGSTK QGDDKYFDHR 120 EVESRRLTGP EVSTADVTRE ADTRYRAESN LMEDTPSGSS SSLRDARFSQ NVESFDMATS 180 RYLPGNEPTD LKCVKPRTGP SGYLKVKAKV ENASITAVKR QLGSLYRQDG PLLGVVFDQL 240 PQGAFESSVQ TPVDDPIYSG EPVPDLTPDF TKVDKRSNSC IGYGSISKIN SHGSDLDGAN 300 LKKSNKSSHP EYYINQKPDR NSSMHNGDRY YLGRNSSIEM RKDSGREVAV DGRCNYKLMA 360 KHDGAANPGS SGGFQSSYIG KVNREQVTAR FTSRDGLSLD IAEEEDLQCK PSNFVHKGSK 420 QHYCPERELS STVEKDYIHV DRPTVDEDYN EDHVKIQWEK EMRVAKRATD EEAPNHQEYV 480 RKASVTRMPS QTNHQISFAA EMSSSFSEDD KTEETSSFED *

Sequence ? help Back to Top

Protein Sequence Length: 521 aa Download sequence Send to blast

MEDSHEIHSE DDKGHVGKLK ARIMKTPAQL EGLEKFYQEH KYPTESMKLE VAQSLGLTEK  60
QVSGWFCHRR LKDKRLSSRE TNAKGRQDRS SGVIQDRGSG FRQDSCGSTK QGDDKYFDHR  120
EVESRRLTGP EVSTADVTRE ADTRYRAESN LMEDTPSGSS SSLRDARFSQ NVESFDMATS  180
RYLPGNEPTD LKCVKPRTGP SGYLKVKAKV ENASITAVKR QLGSLYRQDG PLLGVVFDQL  240
PQGAFESSVQ TPVDDPIYSG EPVPDLTPDF TKVDKRSNSC IGYGSISKIN SHGSDLDGAN  300
LKKSNKSSHP EYYINQKPDR NSSMHNGDRY YLGRNSSIEM RKDSGREVAV DGRCNYKLMA  360
KHDGAANPGS SGGFQSSYIG KVNREQVTAR FTSRDGLSLD IAEEEDLQCK PSNFVHKGSK  420
QHYCPERELS STVEKDYIHV DRPTVDEDYN EDHVKIQWEK EMRVAKRATD EEAPNHQEYV  480
RKASVTRMPS QTNHQISFAA EMSSSFSEDD KTEETSSFED *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.10337	0.0	cell culture\| flower\| fruit\| leaf

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc12g099760.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004252889.1	0.0	homeobox-DDT domain protein RLT1-like
TrEMBL	A0A3Q7JFP8	0.0	A0A3Q7JFP8_SOLLC; Uncharacterized protein
STRING	Solyc12g099760.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3436	22	42
Representative plant	OGRP8823	8	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	9e-64	HB-other family protein

Link Out ? help Back to Top
Phytozome	Solyc12g099760.1.1
Entrez Gene	101256269

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]