PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc12g099370.1.1 | ||||||||
Common Name | LOC101265416 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | GATA | ||||||||
Protein Properties | Length: 169aa MW: 18486.8 Da PI: 10.2961 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 60.4 | 2.3e-19 | 33 | 67 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ CgttkTplWR gp g+k+LCnaCG++ rkk++ Solyc12g099370.1.1 33 CVDCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRR 67 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 12.73 | 27 | 63 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 1.1E-14 | 27 | 77 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 4.66E-13 | 29 | 67 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 9.3E-16 | 31 | 67 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 7.60E-13 | 32 | 67 | No hit | No description |
Pfam | PF00320 | 4.5E-17 | 33 | 67 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 33 | 58 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
MVDTSDKVQE TGEMIGQNQT PERVTSETNQ KTCVDCGTTK TPLWRGGPAG PKSLCNACGI 60 RSRKKRRALL GLNKDDKKSK KSSSKSVVNH HQQNQSSNSS SSTSSSGESM SNVIVKNECI 120 PYKKRLLHFD REVGLQRPRS NSTHRRKLGE EEQAAFLLMA LSCGSVYA* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00554 | DAP | Transfer from AT5G49300 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc12g099370.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004252918.1 | 1e-122 | GATA transcription factor 16-like | ||||
TrEMBL | A0A3Q7JFI8 | 1e-121 | A0A3Q7JFI8_SOLLC; Uncharacterized protein | ||||
STRING | Solyc12g099370.1.1 | 1e-122 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1999 | 23 | 62 | Representative plant | OGRP68 | 17 | 287 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06740.1 | 4e-30 | GATA transcription factor 15 |
Link Out ? help Back to Top | |
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Phytozome | Solyc12g099370.1.1 |
Entrez Gene | 101265416 |
Publications ? help Back to Top | |||
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