PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc12g099220.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | GRAS | ||||||||
Protein Properties | Length: 576aa MW: 66357.1 Da PI: 5.2741 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 285.6 | 1.4e-87 | 190 | 560 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn.sseelaalklfsevsP 89 lve Ll+ Ae v ++ a lL++ +l+ ++g p++Rl+ yf +AL++r+ +++++ k l ++ ++ + + ++++a ++ ++ P Solyc12g099220.1.1 190 LVERLLASAEKVGEKVYDIAIDLLNECDKLSYKTGHPVERLVYYFSRALRERVDIeTGKNCTKGLGIRRMRDLQeTLRSINACTIAVQDMP 280 57899************************************************876999******98888876558888999999****** PP GRAS 90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180 + ++ ++ qaIle ve+++++Hi+D++i++G+QW L+qaLa++ ++ l++T++ + + s++++eetg+rL +fA++l+ p+ f++ Solyc12g099220.1.1 281 MCEVVKFAGIQAILENVESSKKIHIVDLEIKMGVQWTILMQALATQCSNLEYLKVTALIDVQ--SRTNVEETGKRLMSFAKSLHFPLCFKI 369 ************************************************************66..*************************** PP GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271 ++++++ dl+ e+L+++p+E+laV +++ l ++ + +++ d ++ ++k+l+P+++vv+e ea++ns+ F++rf+eal y+ a fd + Solyc12g099220.1.1 370 VMVEDIFDLKREDLDIDPEESLAVYSQFLLSNMI----THQDRLDFLMGFIKGLNPRIMVVAEVEANLNSPVFVNRFIEALFYHGAYFDLF 456 ****************************999998....555567779******************************************** PP GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlg 361 e + +++++r+ +E+e++ i+n++a+eg+er++rh t e Wre ++++G+ ++++s++ qak++++k+ ++ +++e +++ +++g Solyc12g099220.1.1 457 EDCMRNNESTRNAMEEEVMWHGIRNIIANEGEERTMRHVTIELWREYFKRFGMVEMKMSDSSLYQAKTVVEKFTgKNSFTLEMNENFVTIG 547 ****9999******************************************************************9999************* PP GRAS 362 WkdrpLvsvSaWr 374 Wk+ pL s+SaW+ Solyc12g099220.1.1 548 WKGTPLNSLSAWK 560 ************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 40.677 | 164 | 539 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.0E-85 | 190 | 560 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 576 aa Download sequence Send to blast |
MEDASGTSEF FLVKESLSSS SGTIRRFYTG FCFWRQHVCC CLASKLIQTN MEKSIIWPFY 60 EPEEKTNSMQ EQNEQYSVKL DDWDFDVVDK TTTILSIKEA TDDNKRANNS LISSLNILKD 120 FGNGFRKLKG QKIDVAQISE NECTSSVCKL SAEEILRFGG QKFMQRIEFD HTFVDSLCSL 180 SEEESRSVML VERLLASAEK VGEKVYDIAI DLLNECDKLS YKTGHPVERL VYYFSRALRE 240 RVDIETGKNC TKGLGIRRMR DLQETLRSIN ACTIAVQDMP MCEVVKFAGI QAILENVESS 300 KKIHIVDLEI KMGVQWTILM QALATQCSNL EYLKVTALID VQSRTNVEET GKRLMSFAKS 360 LHFPLCFKIV MVEDIFDLKR EDLDIDPEES LAVYSQFLLS NMITHQDRLD FLMGFIKGLN 420 PRIMVVAEVE ANLNSPVFVN RFIEALFYHG AYFDLFEDCM RNNESTRNAM EEEVMWHGIR 480 NIIANEGEER TMRHVTIELW REYFKRFGMV EMKMSDSSLY QAKTVVEKFT GKNSFTLEMN 540 ENFVTIGWKG TPLNSLSAWK FHKRSTFHIA NYLTL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 7e-37 | 223 | 560 | 36 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc12g099220.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC239738 | 1e-20 | Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-240p19 map 1, complete sequence | |||
GenBank | AM087200 | 1e-20 | Solanum lycopersicum complete chloroplast genome, cultivar IPA-6 | |||
GenBank | DQ347959 | 1e-20 | Lycopersicon esculentum cultivar LA3023 chloroplast, complete genome |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004253154.1 | 0.0 | DELLA protein RGL1-like | ||||
TrEMBL | K4DHU3 | 0.0 | K4DHU3_SOLLC; Uncharacterized protein | ||||
STRING | Solyc12g099220.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3427 | 21 | 49 | Representative plant | OGRP2520 | 7 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66350.1 | 1e-51 | RGA-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Solyc12g099220.1.1 |
Publications ? help Back to Top | |||
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