PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc12g099130.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB | ||||||||
Protein Properties | Length: 236aa MW: 28055.3 Da PI: 6.2519 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.7 | 1.1e-17 | 20 | 67 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd +l +++ +G g+W++ +r+ g++Rt+k+c++rw++yl Solyc12g099130.1.1 20 RGPWTVEEDFILMNYISHHGEGRWNSLSRCAGLKRTGKSCRLRWLNYL 67 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.2 | 2.5e-15 | 74 | 116 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++ Solyc12g099130.1.1 74 GNITLEEQLLILQLHFRWGNR-WSKIAEHLP-GRTDNEIKNYWRT 116 6779*****************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 21.979 | 15 | 71 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.29E-30 | 17 | 114 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.8E-14 | 19 | 69 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-15 | 20 | 67 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.7E-22 | 21 | 74 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.84E-9 | 22 | 67 | No hit | No description |
PROSITE profile | PS51294 | 16.867 | 72 | 122 | IPR017930 | Myb domain |
SMART | SM00717 | 9.0E-14 | 72 | 120 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-14 | 74 | 116 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-21 | 75 | 121 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.38E-6 | 93 | 116 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MDKLINQENY IDEEIMELRR GPWTVEEDFI LMNYISHHGE GRWNSLSRCA GLKRTGKSCR 60 LRWLNYLRPN IRHGNITLEE QLLILQLHFR WGNRWSKIAE HLPGRTDNEI KNYWRTRVQK 120 HAKQLKCDVN SKQFKDTLRY LWIPRLVERI EASKISNNNC INEAQRSVTS TSVTLENSSV 180 ATSSENSNQD YNQVNQSDQL WYEDYQAMDQ QNNIELWMDN EDVFNNLCNI EDIWS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 6e-24 | 17 | 114 | 24 | 120 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.22829 | 0.0 | fruit |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in leaves. Expressed in roots and shoots. Expressed at low levels in flowers. {ECO:0000269|PubMed:22301384}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc12g099130.1.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU934734 | 0.0 | Solanum lycopersicum ABA-induced MYB transcription factor (AIM1) mRNA, complete cds |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001234125.1 | 1e-151 | ABA-induced MYB transcription factor | ||||
Refseq | XP_010314656.1 | 1e-151 | ABA-induced MYB transcription factor isoform X1 | ||||
Swissprot | Q10MB4 | 8e-86 | MYB2_ORYSJ; Transcription factor MYB2 | ||||
TrEMBL | C0J8F7 | 1e-150 | C0J8F7_SOLLC; ABA-induced MYB transcription factor | ||||
STRING | Solyc12g099130.1.1 | 1e-173 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1397 | 23 | 75 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49620.1 | 5e-81 | myb domain protein 78 |
Link Out ? help Back to Top | |
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Phytozome | Solyc12g099130.1.1 |