PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc12g099130.1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 236aa    MW: 28055.3 Da    PI: 6.2519
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc12g099130.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.71.1e-172067148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg+WT eEd +l +++  +G g+W++ +r+ g++Rt+k+c++rw++yl
  Solyc12g099130.1.1 20 RGPWTVEEDFILMNYISHHGEGRWNSLSRCAGLKRTGKSCRLRWLNYL 67
                        89********************************************97 PP

2Myb_DNA-binding48.22.5e-1574116246
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         g+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Solyc12g099130.1.1  74 GNITLEEQLLILQLHFRWGNR-WSKIAEHLP-GRTDNEIKNYWRT 116
                         6779*****************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.9791571IPR017930Myb domain
SuperFamilySSF466892.29E-3017114IPR009057Homeodomain-like
SMARTSM007175.8E-141969IPR001005SANT/Myb domain
PfamPF002491.2E-152067IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-222174IPR009057Homeodomain-like
CDDcd001672.84E-92267No hitNo description
PROSITE profilePS5129416.86772122IPR017930Myb domain
SMARTSM007179.0E-1472120IPR001005SANT/Myb domain
PfamPF002492.8E-1474116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-2175121IPR009057Homeodomain-like
CDDcd001672.38E-693116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MDKLINQENY IDEEIMELRR GPWTVEEDFI LMNYISHHGE GRWNSLSRCA GLKRTGKSCR  60
LRWLNYLRPN IRHGNITLEE QLLILQLHFR WGNRWSKIAE HLPGRTDNEI KNYWRTRVQK  120
HAKQLKCDVN SKQFKDTLRY LWIPRLVERI EASKISNNNC INEAQRSVTS TSVTLENSSV  180
ATSSENSNQD YNQVNQSDQL WYEDYQAMDQ QNNIELWMDN EDVFNNLCNI EDIWS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-241711424120MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.228290.0fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in leaves. Expressed in roots and shoots. Expressed at low levels in flowers. {ECO:0000269|PubMed:22301384}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc12g099130.1.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9347340.0Solanum lycopersicum ABA-induced MYB transcription factor (AIM1) mRNA, complete cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001234125.11e-151ABA-induced MYB transcription factor
RefseqXP_010314656.11e-151ABA-induced MYB transcription factor isoform X1
SwissprotQ10MB48e-86MYB2_ORYSJ; Transcription factor MYB2
TrEMBLC0J8F71e-150C0J8F7_SOLLC; ABA-induced MYB transcription factor
STRINGSolyc12g099130.1.11e-173(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13972375
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.15e-81myb domain protein 78
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  3. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  4. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  5. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  6. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]