PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc12g098620.1.1
Common NameLOC101262401
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 405aa    MW: 45620.3 Da    PI: 6.5117
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc12g098620.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.42.5e-08229276455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         ah+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Solyc12g098620.1.1 229 AHSLAERVRREKIGERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 276
                         8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-16223292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.37E-9223280No hitNo description
PROSITE profilePS5088815.25225275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-16225292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-5229276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-8231281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MEKKNLFLNN VNTMNELNCT STSFYNPNWE NSSMDYQNDN ILSSNSNNFG EISPNSFVGS  60
NNNSCYTTPL NSPPRLNLSN FDHQIKGNFP NTSNNLPHFS TNLGNFSCFG GNDSQFVQNL  120
ESCKLSRNKS MKESEFGDSR ENSSISQQIQ LEEVGIKCQN DANSKKGKSI PKRKAKEITP  180
KNDNVSTQNN ESSSKRVKSD EKNEENQKPQ DSLKDYIHVR ARRGQATDAH SLAERVRREK  240
IGERMKFLQD LVPGCNKVTG KAVMLDEIIN YVQSLQCQVE FLSMKLSNLN STTDFNAESL  300
TSKNMFQSVG SLHHNMNSSE SSVQEFPYGF QSQQGSNIQS FLTKETEFPF KINPHLDGFV  360
EQTPQVPTFF EDHDLHSFIH MGFSQIQAQN YPGNVSTAQM KAEL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170176PKRKAKE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.163929e-79callus| fruit| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc12g098620.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU9157226e-10S.lycopersicum DNA sequence from clone LE_HBa-128L9 on chromosome 4, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004253164.10.0transcription factor bHLH62-like isoform X1
TrEMBLA0A3Q7JDA40.0A0A3Q7JDA4_SOLLC; Uncharacterized protein
STRINGSolyc12g098620.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10572383
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.13e-69bHLH family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]