PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc12g098520.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HSF
Protein Properties Length: 479aa    MW: 53375.1 Da    PI: 5.3602
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc12g098520.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.62.7e-35191092101
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+ye+++d+++++++sw+ +g+sfvv+++ efa+ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+         weF++++F k++k+
  Solyc12g098520.1.1  19 FLSKTYEMVDDSQTDDIVSWTPTGHSFVVWNPPEFARILLPTYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANEEFLKDQKH 100
                         9****************************************************************999.........************** PP

                         XXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkk 101
                         ll++i+r+k
  Solyc12g098520.1.1 101 LLKNIHRRK 109
                         *******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467853.27E-3615108IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.7E-3815108IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.0E-6115108IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-201942IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.1E-3119108IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-205769IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405882IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-207082IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MDVISAAVAA GGGGGPAPFL SKTYEMVDDS QTDDIVSWTP TGHSFVVWNP PEFARILLPT  60
YFKHNNFSSF IRQLNTYGFR KIDPERWEFA NEEFLKDQKH LLKNIHRRKP IHSHSHPPGS  120
TVDPERAAFE EEIDKLTREK SGLEANVSRF RQQQSAAKLQ LEELTGRVGS IEQRQESLLI  180
FVEKAIQNPD FVERLAQKLE SMDISAFSKK RRLPQIDSTQ PVQESMSVDN HSSSRVEFGN  240
LSHQDFSNKL RLELSPAVSD INVLSCSTQS SNEDGGSPAH RRISEGWSRE VQLRTVGAIY  300
TPEAIELSDT GTSFMLKMDS SLPHASSNAE SSRLHSLPQS LTSNEEVDGH ISCQLNLSLA  360
SCLSQVDKNQ YSARMPQIGQ EIGKCFESQS DANDKIPPTD DKSLPPSHDA TTNKQVPAAA  420
PVRVNDVFWE QFLTERPGCS DNEEASSSYK GNIYDEQDER KSNQGVASNT RKVEHLTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-24110812129Heat shock factor protein 1
5d5v_B2e-24110812129Heat shock factor protein 1
5d5v_D2e-24110812129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.98591e-129callus| flower| fruit| leaf| root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc12g098520.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019067113.10.0heat stress transcription factor A-5
SwissprotQ94BZ51e-161HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBLA0A3Q7JEE10.0A0A3Q7JEE1_SOLLC; Uncharacterized protein
STRINGSolyc12g098520.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA94612125
Representative plantOGRP97161012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.11e-163HSF family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Reňák D,Gibalová A,Solcová K,Honys D
    A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein.
    Plant Cell Environ., 2014. 37(3): p. 670-83
    [PMID:23961845]