PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc12g096200.1.1
Common NameLOC101245745
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 126aa    MW: 14199.6 Da    PI: 10.2635
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc12g096200.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding475.9e-151461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+W+ eEd ll  +++++G g+W++ +   g+ R+ k+c++rw +yl
  Solyc12g096200.1.1 14 KGPWSIEEDMLLTSYIHLHGEGNWRSLPMNAGLLRCSKSCRLRWVNYL 61
                        79******************************99************97 PP

2Myb_DNA-binding50.26.1e-1667111147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg++++eEd+l++ +  +lGg+ W++Ia ++  gRt++++k++w++ 
  Solyc12g096200.1.1  67 RGNFSPEEDDLIIPLYSLLGGR-WSLIAGRLS-GRTDNEIKNHWHTN 111
                         89********************.*********.***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.35961IPR017930Myb domain
SuperFamilySSF466893.26E-3011108IPR009057Homeodomain-like
SMARTSM007174.5E-111363IPR001005SANT/Myb domain
PfamPF002491.1E-131461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.8E-221568IPR009057Homeodomain-like
CDDcd001673.58E-91661No hitNo description
PROSITE profilePS5129424.16562116IPR017930Myb domain
SMARTSM007171.6E-1266114IPR001005SANT/Myb domain
PfamPF002491.5E-1367111IPR001005SANT/Myb domain
CDDcd001671.63E-969112No hitNo description
Gene3DG3DSA:1.10.10.602.0E-2369117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MGRTPCCSKV GMKKGPWSIE EDMLLTSYIH LHGEGNWRSL PMNAGLLRCS KSCRLRWVNY  60
LRPGIKRGNF SPEEDDLIIP LYSLLGGRWS LIAGRLSGRT DNEIKNHWHT NLLKKLKASG  120
IEPKP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-221211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in salt stress response. Confers tolerance to salt stress (PubMed:22575450). Involved in distinct cellular processes in response to osmotic stress, including control of primary metabolism and negative regulation of short-term transcriptional responses to osmotic stress (PubMed:19211694). Can activate the steps necessary for aliphatic suberin synthesis and deposition of cell wall-associated suberin-like lamellae. Involved in the production of aliphatic suberin under abiotic stress conditions (PubMed:25060192). {ECO:0000269|PubMed:19211694, ECO:0000269|PubMed:22575450, ECO:0000269|PubMed:25060192}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc12g096200.1.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress (PubMed:19211694, PubMed:25060192). Induced by osmotic stress (PubMed:19211694). Induced by abscisic acid (PubMed:25060192). {ECO:0000269|PubMed:19211694, ECO:0000269|PubMed:25060192}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027769640.12e-85transcription factor MYB8-like
SwissprotQ9M0J53e-57MYB41_ARATH; Transcription factor MYB41
TrEMBLA0A3Q7JEH67e-86A0A3Q7JEH6_SOLLC; Uncharacterized protein
STRINGSolyc12g096200.1.11e-86(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28110.11e-59myb domain protein 41
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]