PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc12g096200.1.1 | ||||||||
Common Name | LOC101245745 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB | ||||||||
Protein Properties | Length: 126aa MW: 14199.6 Da PI: 10.2635 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47 | 5.9e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+ eEd ll +++++G g+W++ + g+ R+ k+c++rw +yl Solyc12g096200.1.1 14 KGPWSIEEDMLLTSYIHLHGEGNWRSLPMNAGLLRCSKSCRLRWVNYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 50.2 | 6.1e-16 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++++eEd+l++ + +lGg+ W++Ia ++ gRt++++k++w++ Solyc12g096200.1.1 67 RGNFSPEEDDLIIPLYSLLGGR-WSLIAGRLS-GRTDNEIKNHWHTN 111 89********************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.35 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.26E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.5E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-13 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.8E-22 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.58E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.165 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 1.6E-12 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-13 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.63E-9 | 69 | 112 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-23 | 69 | 117 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 126 aa Download sequence Send to blast |
MGRTPCCSKV GMKKGPWSIE EDMLLTSYIH LHGEGNWRSL PMNAGLLRCS KSCRLRWVNY 60 LRPGIKRGNF SPEEDDLIIP LYSLLGGRWS LIAGRLSGRT DNEIKNHWHT NLLKKLKASG 120 IEPKP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 4e-22 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in salt stress response. Confers tolerance to salt stress (PubMed:22575450). Involved in distinct cellular processes in response to osmotic stress, including control of primary metabolism and negative regulation of short-term transcriptional responses to osmotic stress (PubMed:19211694). Can activate the steps necessary for aliphatic suberin synthesis and deposition of cell wall-associated suberin-like lamellae. Involved in the production of aliphatic suberin under abiotic stress conditions (PubMed:25060192). {ECO:0000269|PubMed:19211694, ECO:0000269|PubMed:22575450, ECO:0000269|PubMed:25060192}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc12g096200.1.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress (PubMed:19211694, PubMed:25060192). Induced by osmotic stress (PubMed:19211694). Induced by abscisic acid (PubMed:25060192). {ECO:0000269|PubMed:19211694, ECO:0000269|PubMed:25060192}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027769640.1 | 2e-85 | transcription factor MYB8-like | ||||
Swissprot | Q9M0J5 | 3e-57 | MYB41_ARATH; Transcription factor MYB41 | ||||
TrEMBL | A0A3Q7JEH6 | 7e-86 | A0A3Q7JEH6_SOLLC; Uncharacterized protein | ||||
STRING | Solyc12g096200.1.1 | 1e-86 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28110.1 | 1e-59 | myb domain protein 41 |
Link Out ? help Back to Top | |
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Phytozome | Solyc12g096200.1.1 |
Entrez Gene | 101245745 |
Publications ? help Back to Top | |||
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