PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc12g089190.1.1 | ||||||||
Common Name | LOC101246607 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB_related | ||||||||
Protein Properties | Length: 89aa MW: 10293.6 Da PI: 9.1198 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.9 | 1.5e-10 | 3 | 47 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 +WT+ +++ +a +++ ++ +W+ Iar++g g++++++k ++ Solyc12g089190.1.1 3 NWTKNQNKKFEEALALFDKDtpdRWHNIARCVG-GKSAEEVKRHYE 47 7********************************.**********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 2.4E-6 | 1 | 52 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51293 | 12.152 | 1 | 54 | IPR017884 | SANT domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-5 | 2 | 56 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.37E-13 | 3 | 57 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.30E-7 | 3 | 50 | No hit | No description |
Pfam | PF00249 | 1.4E-7 | 3 | 47 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 89 aa Download sequence Send to blast |
MANWTKNQNK KFEEALALFD KDTPDRWHNI ARCVGGKSAE EVKRHYELLV KDVMQIENDQ 60 VPLPNYRGAS SNGRSYSNEQ RLMQNLRL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 5e-28 | 4 | 88 | 11 | 92 | RADIALIS |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the micropylar endosperm surrounding globular-stage embryos but no expression was detected elsewhere, including floral tissues. {ECO:0000269|PubMed:17672842}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc12g089190.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015060852.1 | 2e-61 | protein RADIALIS-like 3 | ||||
Refseq | XP_019067007.1 | 2e-61 | protein RADIALIS-like 3 | ||||
Swissprot | Q1A173 | 1e-34 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | K4DGZ0 | 5e-60 | K4DGZ0_SOLLC; Uncharacterized protein | ||||
STRING | Solyc12g089190.1.1 | 8e-61 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA202 | 24 | 231 | Representative plant | OGRP347 | 12 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 5e-37 | RAD-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Solyc12g089190.1.1 |
Entrez Gene | 101246607 |
Publications ? help Back to Top | |||
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