PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc12g089170.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 92aa    MW: 10469.7 Da    PI: 5.6025
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc12g089170.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.12.6e-10451147
                        TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                        +  WT eE + + +a + + ++   +W+ +a+  g  +t++++k+++qk+
  Solyc12g089170.1.1  4 KSTWTREENKMFENALAIFDKDthdRWSNVAKATG--KTEEEVKLHYQKL 51
                        578*******************************8..9**********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.259152IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.3E-6353IPR009057Homeodomain-like
SMARTSM007173.0E-9354IPR001005SANT/Myb domain
PfamPF002491.2E-7451IPR001005SANT/Myb domain
SuperFamilySSF466891.27E-13459IPR009057Homeodomain-like
CDDcd001677.51E-6652No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MATKSTWTRE ENKMFENALA IFDKDTHDRW SNVAKATGKT EEEVKLHYQK LVEDIENIEA  60
DLVPLPKYNE VSVDHDNKTT TTNKGKIHAP I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-21268673RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc12g089170.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010314641.12e-55protein RADIALIS-like 5
SwissprotQ8GW758e-25RADL5_ARATH; Protein RADIALIS-like 5
TrEMBLA0A3Q7JDX52e-45A0A3Q7JDX5_SOLLC; Uncharacterized protein
STRINGSolyc12g089170.1.16e-61(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19510.13e-27RAD-like 5
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]