PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc12g088610.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB_related | ||||||||
Protein Properties | Length: 85aa MW: 9910.95 Da PI: 10.2637 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.3 | 3.1e-17 | 11 | 53 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 W +eEdell ++vkq+G+++W I + ++ R++k+c++rw + Solyc12g088610.1.1 11 YWNPEEDELLQKLVKQHGTKNWFVIGQLIP-DRSGKSCRLRWCD 53 6*****************************.***********76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.808 | 1 | 59 | IPR017930 | Myb domain |
SMART | SM00717 | 6.1E-13 | 8 | 57 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.58E-16 | 11 | 59 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.7E-16 | 11 | 54 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.57E-13 | 12 | 51 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-16 | 12 | 56 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 85 aa Download sequence Send to blast |
MNKKCQKKCL YWNPEEDELL QKLVKQHGTK NWFVIGQLIP DRSGKSCRLR WCDQLSSKWI 60 INLLLLKKMI LLSILMPNLI INGT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc12g088610.1.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010691674.1 | 3e-19 | PREDICTED: transcription factor MYB44-like | ||||
Refseq | XP_023732430.1 | 8e-19 | transcription factor MYB44-like | ||||
Swissprot | O23160 | 1e-18 | MYB73_ARATH; Transcription factor MYB73 | ||||
TrEMBL | A0A3Q7JCQ0 | 8e-53 | A0A3Q7JCQ0_SOLLC; Uncharacterized protein | ||||
STRING | Solyc12g088610.1.1 | 1e-53 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA30541 | 2 | 2 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37260.1 | 8e-19 | myb domain protein 73 |
Link Out ? help Back to Top | |
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Phytozome | Solyc12g088610.1.1 |
Publications ? help Back to Top | |||
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