PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc12g087820.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 107aa MW: 11969.2 Da PI: 11.0288 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 84.8 | 5.1e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 kri++k rqv f+kRr+g+lKKA+E+SvLCd++vav+i+s++g+l+e+ss Solyc12g087820.1.1 9 KRIQDKNCRQVAFCKRRKGLLKKAKEISVLCDVDVAVVIISNRGRLHEFSS 59 79***********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 28.707 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.2E-32 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.57E-26 | 2 | 76 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-24 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.3E-22 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-24 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-24 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 107 aa Download sequence Send to blast |
MGRRKVEIKR IQDKNCRQVA FCKRRKGLLK KAKEISVLCD VDVAVVIISN RGRLHEFSSN 60 NRTSTPCWLD KISPMHQVEL ITLGSSTLGG TMCALLQVTR RALPTF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 6e-16 | 1 | 77 | 1 | 77 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 6e-16 | 1 | 77 | 1 | 77 | Myocyte-specific enhancer factor 2B |
1tqe_R | 6e-16 | 1 | 77 | 1 | 77 | Myocyte-specific enhancer factor 2B |
1tqe_S | 6e-16 | 1 | 77 | 1 | 77 | Myocyte-specific enhancer factor 2B |
6c9l_A | 6e-16 | 1 | 77 | 1 | 77 | Myocyte-specific enhancer factor 2B |
6c9l_B | 6e-16 | 1 | 77 | 1 | 77 | Myocyte-specific enhancer factor 2B |
6c9l_C | 6e-16 | 1 | 77 | 1 | 77 | Myocyte-specific enhancer factor 2B |
6c9l_D | 6e-16 | 1 | 77 | 1 | 77 | Myocyte-specific enhancer factor 2B |
6c9l_E | 6e-16 | 1 | 77 | 1 | 77 | Myocyte-specific enhancer factor 2B |
6c9l_F | 6e-16 | 1 | 77 | 1 | 77 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.21239 | 1e-101 | fruit| leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in flowers and seeds (Ref.1). Expressed in endotesta cell layer of developing seeds (PubMed:28369525). {ECO:0000269|PubMed:28369525, ECO:0000269|Ref.1}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in seed development. {ECO:0000269|PubMed:29853599}. | |||||
UniProt | Probable transcription factor involved in seed development (PubMed:21447172, Ref.1, PubMed:29853599). Plays a role in seed morphogenesis by promoting the correct development of endotesta cell layer, which directs the further development of the seed coat, the endosperm, and consequently the embryo (Ref.1, PubMed:29853599). {ECO:0000269|PubMed:21447172, ECO:0000269|PubMed:29853599, ECO:0000269|Ref.1}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc12g087820.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015060177.1 | 4e-38 | protein MADS AFFECTING FLOWERING 5-like | ||||
Swissprot | A0A217EJJ0 | 3e-23 | AG11S_VITVI; Agamous-like MADS-box protein AGL11 | ||||
Swissprot | F6I457 | 3e-23 | AG11C_VITVI; Agamous-like MADS-box protein AGL11 | ||||
TrEMBL | A0A0V0HMB7 | 3e-36 | A0A0V0HMB7_SOLCH; Putative agamous-like MADS-box protein AGL27-like | ||||
TrEMBL | A0A0V0HME9 | 4e-36 | A0A0V0HME9_SOLCH; Uncharacterized protein | ||||
TrEMBL | M1BI81 | 3e-36 | M1BI81_SOLTU; Uncharacterized protein | ||||
TrEMBL | M1BI83 | 3e-36 | M1BI83_SOLTU; Uncharacterized protein | ||||
STRING | Solyc12g087820.1.1 | 1e-72 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA40 | 24 | 625 | Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09960.2 | 2e-25 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc12g087820.1.1 |