PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc12g049560.1.1
Common NameLOC101261693
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 387aa    MW: 42701.2 Da    PI: 4.7375
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc12g049560.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11.1e-18119168255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+G+r ++ +g+W+AeIrdp     +  r+++g+f taeeAa+a++a +++++g
  Solyc12g049560.1.1 119 QYRGIRKRP-WGKWAAEIRDPQ----KgVRVWIGTFNTAEEAARAYDAEARRIRG 168
                         69*******.**********94....35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.57E-31119177No hitNo description
SMARTSM003804.0E-33119182IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-21119178IPR016177DNA-binding domain
PROSITE profilePS5103223.736119176IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-31119178IPR001471AP2/ERF domain
PRINTSPR003673.5E-11120131IPR001471AP2/ERF domain
PfamPF008471.7E-11120168IPR001471AP2/ERF domain
PRINTSPR003673.5E-11142158IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MCGGAIISDW IPPSRSSSRL TADQLWGCAD LQNKKRNKKK RNPSNYHSKR LRSENVDFEA  60
DFQDFKDFSD DEEAYSLDIK PFAFSASELS GTSAGSESLI SVDANKEVEK SAKRQRKNQY  120
RGIRKRPWGK WAAEIRDPQK GVRVWIGTFN TAEEAARAYD AEARRIRGNK AKVNFPDEAS  180
VPASRQAGKV NPRKVLSDES SNPVPPNTML MNNLNSGYCD NVGLLEEKTK TLNGYEALCV  240
TPVDTGPNPY PHPAAAGVYF NSDQGSNSFG PSDFWGETCS RTPDISSVLS AAIECDEAQF  300
IEGVDLEEKP KSCTNNLVPN NVNTEHKPPE VFSTFESQLK FYQTPYSEGN MDVPVDAFLD  360
ADATQGVENA MDLWSFDELS SLMGGI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-21119176260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112126KRQRKNQYRGIRKRP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.23220.0fruit| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc12g049560.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0134350.0Lycopersicon esculentum clone 132076R, mRNA sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004252402.10.0ethylene-responsive transcription factor RAP2-12
TrEMBLA0A3Q7JAJ20.0A0A3Q7JAJ2_SOLLC; Uncharacterized protein
STRINGSolyc12g049560.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14462466
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.22e-59related to AP2 12
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]