PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc12g049300.1.1
Common NameLOC101264905
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 353aa    MW: 39885.4 Da    PI: 7.0865
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc12g049300.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.83.4e-151461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+ Ed++l d++k +G g W+  ++  g++R++k+c++rw++yl
  Solyc12g049300.1.1 14 KGAWTPLEDKILMDYIKVHGEGKWRNLPKGAGLKRCGKSCRLRWLNYL 61
                        79********************************************97 PP
2Myb_DNA-binding50.74.2e-1667110146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+ +++E++l+++++k+lG++ W++Ia +++ gRt++++k++w++
  Solyc12g049300.1.1  67 RGNISPDEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNT 110
                         7899******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.9E-23564IPR009057Homeodomain-like
PROSITE profilePS5129415.995961IPR017930Myb domain
SuperFamilySSF466893.82E-2812108IPR009057Homeodomain-like
SMARTSM007171.1E-111363IPR001005SANT/Myb domain
PfamPF002491.3E-131461IPR001005SANT/Myb domain
CDDcd001675.20E-91661No hitNo description
PROSITE profilePS5129424.25862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.8E-2465116IPR009057Homeodomain-like
SMARTSM007172.8E-1566114IPR001005SANT/Myb domain
PfamPF002491.6E-1467110IPR001005SANT/Myb domain
CDDcd001671.93E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MGRKPCCSKE GLNKGAWTPL EDKILMDYIK VHGEGKWRNL PKGAGLKRCG KSCRLRWLNY  60
LRPDIKRGNI SPDEEDLIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT NIGRRLQEGT  120
RSGQPNRVIS SNRQRHRSIH TKSTIPNDQE HASPQDSQYL LTDIRHGGSL SSSSPCLVVH  180
TKAIRCTKVF MSPTTSNSVV DTHETTEHDN DHKVMIEENV TTNILTPSSS SFSISSLSEQ  240
EPQQQQQQPV SESYSPTNLS FELENYNFSF MFGFDVDDPF LAELLNAPDL RDQILENSTT  300
TSSTIVNGDI NNSNKNERQR SYFPSSSSQI AIFSEETQHN DLELWINGFS SC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-241211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc12g049300.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2541970.0Solanum lycopersicum strain Heinz 1706 chromosome 12 clone sle-22m10 map 12, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004252516.10.0myb-related protein 308-like
TrEMBLA0A3Q7JB770.0A0A3Q7JB77_SOLLC; Uncharacterized protein
STRINGSolyc12g049300.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.17e-64myb domain protein 3
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]