PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc12g044390.1.1
Common NameLOC101256853
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 144aa    MW: 16152.4 Da    PI: 9.7698
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc12g044390.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.5e-192878155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        + y+GVr ++ +g+Wv+eIr p++   + r++lg++ t+e+Aa+a++ a+++++g
  Solyc12g044390.1.1 28 PVYRGVRMRS-WGKWVSEIRQPRK---KSRIWLGTYPTPEMAARAHDVAALSIKG 78
                        68*****998.**********843...6***********************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.2E-142878IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.2E-322987IPR001471AP2/ERF domain
PROSITE profilePS5103223.2482986IPR001471AP2/ERF domain
SMARTSM003801.5E-362992IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-222987IPR016177DNA-binding domain
PRINTSPR003672.5E-103041IPR001471AP2/ERF domain
CDDcd000181.84E-313086No hitNo description
PRINTSPR003672.5E-105268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MAELVQSSSI SVSKTEEKEK RTRDETYPVY RGVRMRSWGK WVSEIRQPRK KSRIWLGTYP  60
TPEMAARAHD VAALSIKGNS AILNFPQLVE SLPRPASISP RDVQAAAAMD ELNSSVSSTL  120
RHSESMETED QLGQIIEIYK VKF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1830871573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc12g044390.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004252501.11e-101dehydration-responsive element-binding protein 3
SwissprotQ9LYD35e-49DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A3Q7JW807e-91A0A3Q7JW80_SOLLC; Uncharacterized protein
STRINGSolyc12g044390.1.11e-101(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.12e-48ERF family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]