PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc12g042590.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | WRKY | ||||||||
Protein Properties | Length: 217aa MW: 24662.8 Da PI: 9.8854 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.5 | 3.6e-30 | 99 | 159 | 1 | 60 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 ++Dgy+WrKYGqK+ +++++pr+Y++C++a +Cpvkkkv+rs +d ++++ tYegeHnh+k Solyc12g042590.1.1 99 VKDGYEWRKYGQKVTRNNPYPRAYFKCSFApTCPVKKKVQRSIDDMSIIIATYEGEHNHSK 159 58***************************99****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.4E-29 | 91 | 159 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 25.408 | 94 | 160 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.88E-25 | 95 | 158 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.2E-34 | 99 | 159 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.7E-24 | 100 | 157 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MPSNDEAASD HFAKEVKRLS GENKKLREML SVMYDNYNTL RKQYMNNCST SGTSRKRKAE 60 KITSRVNSEL SDEDSSCNKS RVLVQHHRIQ RSDHTTLLVK DGYEWRKYGQ KVTRNNPYPR 120 AYFKCSFAPT CPVKKKVQRS IDDMSIIIAT YEGEHNHSKV VLEAGEGSSA TTIGHSHKQP 180 EFNKLLIDQM ASSLTRDPKF KAALAAALHE KNYPYT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 9e-21 | 98 | 157 | 13 | 71 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250|UniProtKB:Q9SUP6}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc12g042590.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010314251.1 | 1e-163 | probable WRKY transcription factor 40 | ||||
Swissprot | Q9SAH7 | 4e-55 | WRK40_ARATH; Probable WRKY transcription factor 40 | ||||
TrEMBL | A0A3Q7J8U1 | 1e-161 | A0A3Q7J8U1_SOLLC; Uncharacterized protein | ||||
STRING | Solyc12g042590.1.1 | 1e-163 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA17255 | 5 | 5 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80840.1 | 2e-57 | WRKY DNA-binding protein 40 |
Link Out ? help Back to Top | |
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Phytozome | Solyc12g042590.1.1 |