PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Solyc12g040230.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 267aa MW: 29503.1 Da PI: 8.1716 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.5 | 1.7e-06 | 66 | 84 | 6 | 25 |
-SGGGGTS--TTTTT-SS-S CS zf-CCCH 6 CrffartGtCkyGdrCkFaH 25 C+ffar G C G++C+F H Solyc12g040230.1.1 66 CKFFAR-GRCTKGNSCRFLH 84 ******.************* PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 12.69 | 60 | 87 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-6 | 61 | 85 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0093 | 61 | 86 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.4E-4 | 66 | 86 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 267 aa Download sequence Send to blast |
MSFSPTHFFC VCWSILSPTL LDTLPINSFS CKEAIGDLKK TSQRLDVLKT RKRSAADLED 60 RFATGCKFFA RGRCTKGNSC RFLHTKQPVT SHETSKIPHD KGLEEKSLLD GSSQSGENLR 120 MRGGEDSLHP NSHLGYTSKS PAFPSSITGY SWKNHLSQDT RIYQSDVGDG SFPVLINHMQ 180 ANADPASTGS NKVQISGHSD MLPEKDLPRH GTTVAHQENM NTSSKEDKHL ESEIDVDNKS 240 VNTKSVVLKN FHVALVEFVK ELLRPT* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Solyc12g040230.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC254130 | 1e-157 | Solanum lycopersicum strain Heinz 1706 chromosome 12 clone slm-19p6 map 12, complete sequence | |||
GenBank | AC254257 | 1e-157 | Solanum lycopersicum strain Heinz 1706 chromosome 12 clone slm-12m6 map 12, complete sequence | |||
GenBank | AC254304 | 1e-157 | Solanum lycopersicum strain Heinz 1706 chromosome 12 clone sle-47p9 map 12, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006343225.1 | 1e-24 | PREDICTED: protein FRIGIDA-ESSENTIAL 1-like isoform X1 | ||||
Refseq | XP_006343226.1 | 1e-24 | PREDICTED: protein FRIGIDA-ESSENTIAL 1-like isoform X1 | ||||
Refseq | XP_006343227.1 | 1e-24 | PREDICTED: protein FRIGIDA-ESSENTIAL 1-like isoform X1 | ||||
TrEMBL | K4DES0 | 0.0 | K4DES0_SOLLC; Uncharacterized protein | ||||
STRING | Solyc12g040230.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA30397 | 2 | 2 | Representative plant | OGRP7281 | 7 | 9 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Solyc12g040230.1.1 |
Publications ? help Back to Top | |||
---|---|---|---|
|