PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc12g036480.1.1

Common Name

LOC101257935

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NAC

Protein Properties

Length: 327aa MW: 37080.4 Da PI: 6.6813

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc12g036480.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	176.9	5.4e-55	5	132	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPtdeel+++yL++k+++ ++++ ++i++vd++k+ePwdLp+k++ +ekewyfFs +d+ky+tg r+nrat++gyWk+tgkdke Solyc12g036480.1.1 5 LPPGFRFHPTDEELITCYLNNKISDFNFTT-RAIADVDLNKSEPWDLPAKASMGEKEWYFFSLKDRKYPTGLRTNRATEAGYWKTTGKDKE 94 79***********************999.89***********999999********************************* PP NAM 92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +g lvg+kktLvfy+grapkgekt+Wvmheyr+ Solyc12g036480.1.1 95 IYRGgTGVLVGMKKTLVFYRGRAPKGEKTNWVMHEYRI 132 867778**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.62E-63	3	153	IPR003441	NAC domain
PROSITE profile	PS51005	59.783	5	153	IPR003441	NAC domain
Pfam	PF02365	2.2E-28	6	132	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MDENLPPGFR FHPTDEELIT CYLNNKISDF NFTTRAIADV DLNKSEPWDL PAKASMGEKE 60 WYFFSLKDRK YPTGLRTNRA TEAGYWKTTG KDKEIYRGGT GVLVGMKKTL VFYRGRAPKG 120 EKTNWVMHEY RIETTFGYKP SKEEWVVCRV FQKSSTVKKP QPTSSSPLSL ESPCDTNYTI 180 TNELGDIELP FNFNYLTTTP STAINNISLH NYNNDNINLA AATREANSHP LLPWSSNLLS 240 SNLSSVNSLL FRALQLKSYS PREQATTTHD YAFMLPQENI ITTQFGNDFA VNNIGAPSSS 300 TVLDNSVQQQ QQQQQEQSYK LDSNIW*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-55	4	159	16	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-55	4	159	16	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-55	4	159	16	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-55	4	159	16	171	NO APICAL MERISTEM PROTEIN
3swm_A	3e-55	4	159	19	174	NAC domain-containing protein 19
3swm_B	3e-55	4	159	19	174	NAC domain-containing protein 19
3swm_C	3e-55	4	159	19	174	NAC domain-containing protein 19
3swm_D	3e-55	4	159	19	174	NAC domain-containing protein 19
3swp_A	3e-55	4	159	19	174	NAC domain-containing protein 19
3swp_B	3e-55	4	159	19	174	NAC domain-containing protein 19
3swp_C	3e-55	4	159	19	174	NAC domain-containing protein 19
3swp_D	3e-55	4	159	19	174	NAC domain-containing protein 19
4dul_A	2e-55	4	159	16	171	NAC domain-containing protein 19
4dul_B	2e-55	4	159	16	171	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00364	DAP	Transfer from AT3G18400	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc12g036480.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004252235.1	0.0	protein CUP-SHAPED COTYLEDON 1
TrEMBL	A0A3Q7J8P3	0.0	A0A3Q7J8P3_SOLLC; Uncharacterized protein
STRING	Solyc12g036480.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279
Representative plant	OGRP17	15	800

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18400.1	5e-98	NAC domain containing protein 58

Link Out ? help Back to Top
Phytozome	Solyc12g036480.1.1
Entrez Gene	101257935

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]