PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc12g019820.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB_related | ||||||||
Protein Properties | Length: 76aa MW: 8701.02 Da PI: 8.785 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34.3 | 5.5e-11 | 31 | 64 | 2 | 37 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtl 37 + +T eE++++++a++++G+ W+ Ia+ ++ gRt Solyc12g019820.1.1 31 QYFTLEEEDIILKAHAKFGNQ-WAMIASLLP-GRTN 64 579****************99.*********.**95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.773 | 1 | 28 | IPR017930 | Myb domain |
CDD | cd00167 | 0.00439 | 3 | 24 | No hit | No description |
SuperFamily | SSF46689 | 7.89E-21 | 4 | 68 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.7E-12 | 4 | 38 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 7.725 | 30 | 71 | IPR017930 | Myb domain |
Pfam | PF00249 | 8.2E-9 | 31 | 63 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.94E-7 | 33 | 63 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-12 | 39 | 68 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 76 aa Download sequence Send to blast |
MGHINQLIPS RTAKSCKERW CNHLNPQLDH QYFTLEEEDI ILKAHAKFGN QWAMIASLLP 60 GRTNGFIKKS LEFHP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 5e-18 | 4 | 68 | 30 | 94 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 5e-18 | 4 | 68 | 30 | 94 | C-Myb DNA-Binding Domain |
1msf_C | 5e-18 | 4 | 68 | 30 | 94 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc12g019820.1.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015060233.1 | 7e-30 | transcription factor MYB44-like | ||||
Swissprot | O23160 | 6e-21 | MYB73_ARATH; Transcription factor MYB73 | ||||
TrEMBL | A0A3Q7J6M5 | 1e-46 | A0A3Q7J6M5_SOLLC; Uncharacterized protein | ||||
STRING | Solyc12g019820.1.1 | 9e-51 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA30249 | 2 | 2 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23290.1 | 3e-24 | myb domain protein 70 |
Link Out ? help Back to Top | |
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Phytozome | Solyc12g019820.1.1 |
Publications ? help Back to Top | |||
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