PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc12g016150.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

M-type_MADS

Protein Properties

Length: 155aa MW: 17645.1 Da PI: 5.3822

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc12g016150.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	40.1	4.6e-13	17	48	9	40
HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS SRF-TF 9 rqvtfskRrngilKKAeELSvLCdaevaviif 40 r+ + kR + ++KKAeELS+ Cd+eva+iif Solyc12g016150.1.1 17 RNSILDKRVTSLFKKAEELSIVCDVEVAIIIF 48 555678*************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	12.881	1	48	IPR002100	Transcription factor, MADS-box
SMART	SM00432	4.2E-4	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.11E-16	12	94	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.0E-12	13	51	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 155 aa Download sequence Send to blast
MATKRLRDTA NYNENVRNSI LDKRVTSLFK KAEELSIVCD VEVAIIIFRP GKIQPITWKS 60 PSLAQDVLTR YLSFIEFKRL SKLVTHEDYL QKKVDKKEEQ ISKLEKMNEM EESINDPWFI 120 QTIATLGDVS GVESAQKEGK GVNVEDDGHS KDLD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc12g016150.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004252136.1	2e-86	MADS-box protein AGL24-like
TrEMBL	K4DD49	1e-109	K4DD49_SOLLC; Uncharacterized protein
STRING	Solyc12g016150.1.1	1e-110	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA378	20	129
Representative plant	OGRP114	13	173

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06500.1	2e-15	AGAMOUS-like 96

Link Out ? help Back to Top
Phytozome	Solyc12g016150.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]