PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc12g014610.1.1
Common NameLOC101265313
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 612aa    MW: 65943.8 Da    PI: 6.675
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc12g014610.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.21.2e-31256313260
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                         +DgynWrKYGqK vkgsefprsYY+Ct+++C+vkk  ers  d++++ei+Y+g+H+h+k
  Solyc12g014610.1.1 256 EDGYNWRKYGQKLVKGSEFPRSYYKCTYPNCEVKKIFERSP-DGQITEIVYKGSHDHPK 313
                         7****************************************.***************85 PP
2WRKY105.42.9e-33427485159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk v++tYeg+Hnh+
  Solyc12g014610.1.1 427 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKSVITTYEGKHNHD 485
                         59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.8E-27246314IPR003657WRKY domain
PROSITE profilePS5081122.653250314IPR003657WRKY domain
SuperFamilySSF1182901.7E-24252314IPR003657WRKY domain
SMARTSM007749.1E-34255313IPR003657WRKY domain
PfamPF031066.1E-24256312IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.1E-37412487IPR003657WRKY domain
SuperFamilySSF1182903.14E-29419487IPR003657WRKY domain
PROSITE profilePS5081138.756422487IPR003657WRKY domain
SMARTSM007741.1E-38427486IPR003657WRKY domain
PfamPF031065.4E-26428485IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 612 aa     Download sequence    Send to blast
MEDSQSHSHS HPNQYNLSAP LLSINESSQQ LKFASSDAAF SHTVSSAVGS NTGARYKLMS  60
PAKLPISRSS ACITIPPGLS PSSFLESPVL LSNIKAEPSP TTGSFSKFQV MQGSSGSAAF  120
SYLRSCSSGN VYGETTGEFE FKFAIASNST SGSLANEAAV ISAGSNQQQS EPLIQVQDRY  180
LSQSLAPSVL VETEMPDSKE LSLPAPVSLE ASSISTSAAA TDNEETNQRG QSNTSTQGSH  240
ADNKDVSSIT AERSSEDGYN WRKYGQKLVK GSEFPRSYYK CTYPNCEVKK IFERSPDGQI  300
TEIVYKGSHD HPKPQPSRRF TPGVLTSIQE DRGERDACLT GQEDKFNTNA QTSNTEPGGN  360
PLSPRQAGDD GLEGTVSQLH SANDQMDEDD PFAKRRKMDG GMDITPIVKP IREPRVVVQT  420
VSEVDILDDG YRWRKYGQKV VRGNPNPRSY YKCTNAGCPV RKHVERASHD PKSVITTYEG  480
KHNHDVPAAR TNNHEMAGSA SVTGGSRVRT EENGSVSLNL GVGIGYGMEN RRNGQLHTLP  540
AETAHSQVQV SSSSMMLVQP ATVAACYNIV NGGMSRFGTM ENRVQGTGFE TLPLQSSAQC  600
PQNYGRILLG P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-37256488878Probable WRKY transcription factor 4
2lex_A2e-37256488878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.52260.0flower| fruit| leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc12g014610.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0135300.0Lycopersicon esculentum clone 132248F, mRNA sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004251909.10.0probable WRKY transcription factor 20
SwissprotQ93WV01e-158WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A3Q7J5W60.0A0A3Q7J5W6_SOLLC; Uncharacterized protein
STRINGSolyc12g014610.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40252344
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.21e-157WRKY family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]