PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc12g011260.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | G2-like | ||||||||
Protein Properties | Length: 236aa MW: 26593.3 Da PI: 7.144 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 47.4 | 4.2e-15 | 110 | 163 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+ Wt++LH++Fv +v+ GG+ P++il+ m g++ ++k LQ YR Solyc12g011260.1.1 110 PRMLWTEDLHREFVAVVDAYGGPWAVKPRHILKEMAHLGISHCQIKNRLQSYRA 163 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.05E-9 | 107 | 166 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.1E-13 | 108 | 165 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.9E-12 | 110 | 164 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MFPLPPSPVV KIGNFQSPII PTMQLRSDEL MSLQQSPFNY QPANDYSFLE NHGLMRLFGG 60 LNTINNNVVN YQDPFMFNPN VLNFNVAQQV QQELGQQPNN VGSTSRVKPP RMLWTEDLHR 120 EFVAVVDAYG GPWAVKPRHI LKEMAHLGIS HCQIKNRLQS YRAKLNPNDA GGRKYISKAS 180 SKKELIQDVQ EQLKNVDGGK VDDDVCVPQL PTEAKRMEAH ISPEDAFIEG LLNWI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc12g011260.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP009275 | 1e-126 | Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0131P16, complete sequence | |||
GenBank | EU124736 | 1e-126 | Solanum lycopersicum clone C12HBa0143N09, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025884461.1 | 1e-59 | transcription factor HHO6-like | ||||
TrEMBL | A0A3Q7J4J1 | 1e-157 | A0A3Q7J4J1_SOLLC; Uncharacterized protein | ||||
STRING | Solyc12g011260.1.1 | 1e-175 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA14605 | 4 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06800.1 | 2e-10 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc12g011260.1.1 |
Publications ? help Back to Top | |||
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