PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc12g011220.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

G2-like

Protein Properties

Length: 234aa MW: 26585.1 Da PI: 6.5083

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc12g011220.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	45.3	1.9e-14	110	163	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+ Wt eLH++F+++++ GG+ + P++i + m g++ ++k LQ+YR Solyc12g011220.1.1 110 PRVLWTDELHRKFLDVINAYGGPWVVKPRHIWKEMAHLGVSHCQIKNRLQRYRA 163 89***************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	6.99E-11	107	166	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.1E-12	108	165	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.4E-11	110	164	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MIPLPPSPAV NIGNFQSPNI PTMQHCYDEL MSLQQSQFNY QPTNDFSFLE NHGLMRLFGG 60 QNTINNNVVG YQDPFMLNPN VINFNIAHQV QQELGQQLNN VGSASRIKPP RVLWTDELHR 120 KFLDVINAYG GPWVVKPRHI WKEMAHLGVS HCQIKNRLQR YRAKLNPNEA GGRKCKASSN 180 KELIQDVQEQ LNNVDGGKAD DNVYVPQLPT EAERMEAHIS PDDAFIEELL NWM*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc12g011220.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP009275	1e-135	Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0131P16, complete sequence
GenBank	EU124736	1e-135	Solanum lycopersicum clone C12HBa0143N09, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025884461.1	1e-63	transcription factor HHO6-like
TrEMBL	K4DCL0	1e-143	K4DCL0_SOLLC; Uncharacterized protein
STRING	Solyc12g011220.1.1	1e-174	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14605	4	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.1	2e-10	G2-like family protein

Link Out ? help Back to Top
Phytozome	Solyc12g011220.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]