PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc12g011200.1.1
Common NameLOC101265102
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 336aa    MW: 37800.5 Da    PI: 6.2379
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc12g011200.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1023.4e-32190247259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dgy+WrKYGqK vk+s+fpr+YY+Ct+++C+vkk+vers ed ++v++tYeg+Hnh+
  Solyc12g011200.1.1 190 EDGYRWRKYGQKAVKNSPFPRNYYKCTTQKCNVKKRVERSYEDSSIVITTYEGQHNHH 247
                         8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.1E-34174249IPR003657WRKY domain
SuperFamilySSF1182902.48E-28181249IPR003657WRKY domain
PROSITE profilePS5081131.307184249IPR003657WRKY domain
SMARTSM007742.2E-37189248IPR003657WRKY domain
PfamPF031064.9E-25190247IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MSDNPFYHDY MGIGGGINNT FPFLVENPSN YNNQPITPNI QNQQFVPSSY MTLTECLHGS  60
MDYNTLSNAF GMSCSSSSEV VCPHIDNQDS TEKYNVSTTA EEPVLDSPLG DNQTSVEVPP  120
TPNSSISSTS NEVGEQEDSS KIKKHVQVKG SQEEGEDKSK KECIAKKKGE KKIKEPRFAF  180
MTKSEIDNLE DGYRWRKYGQ KAVKNSPFPR NYYKCTTQKC NVKKRVERSY EDSSIVITTY  240
EGQHNHHCPA TLRGNASFLS SSHFMPNFPP QLFSQMLNIP PNNQNLLITS STYNYNNNNN  300
NYYYQQQQHQ GSEYTLFGGG TNNGDASWVQ KQEPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-251822501078Probable WRKY transcription factor 4
2lex_A2e-251822501078Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc12g011200.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004251824.10.0WRKY transcription factor 71-like isoform X1
TrEMBLM1AD030.0M1AD03_SOLTU; Uncharacterized protein
STRINGSolyc12g011200.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14852475
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.11e-44WRKY DNA-binding protein 71
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]