PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc12g010410.1.1
Common NameLOC101249149
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HB-other
Protein Properties Length: 330aa    MW: 38098.1 Da    PI: 5.7635
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc12g010410.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.25.7e-082783112154
                         HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         k +yp++e++++L k +gL+ +qV +WF N+R +
  Solyc12g010410.1.1 278 KWPYPTEEDKAKLVKDTGLQLKQVNNWFINQRKR 311
                         569*****************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012555.0E-1464108IPR005540KNOX1
PfamPF037902.3E-1566107IPR005540KNOX1
SMARTSM012564.6E-23117173IPR005541KNOX2
PfamPF037912.4E-17124172IPR005541KNOX2
PROSITE profilePS512139.394232252IPR005539ELK domain
PROSITE profilePS5007111.58252315IPR001356Homeobox domain
SMARTSM003891.9E-10254319IPR001356Homeobox domain
SuperFamilySSF466891.92E-15254317IPR009057Homeodomain-like
CDDcd000862.69E-10255315No hitNo description
Gene3DG3DSA:1.10.10.604.2E-25259315IPR009057Homeodomain-like
PfamPF059201.6E-17272311IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MEFHDHFSQE LGLQQQQQQH NVDDDVSDQS MNFSVKLSQQ YRDEVNNNEH NNNNNNSNVW  60
DQSEKYKADI LNHHLSEQLL SAHVACLRIA TPVDQLPRID EQLTESQNLV AKYYVVGQSQ  120
RSLDDKELDQ FMANYVLLLS SFKEQLQQHV RVHAMEAVMA CWDLDQSLQT LTGVASGEGT  180
GATMSDDDED NQVESETYCH YNGILDGQDS NGFGPLVPTE NERFLMERVR QELKQEFKQD  240
YKGKIVDIRE EILRKRRAGK LPGDTTSALK AWWKSHSKWP YPTEEDKAKL VKDTGLQLKQ  300
VNNWFINQRK RNWHSTPSSS SAQKSKRKR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1308328RKRNWHSTPSSSSAQKSKRKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.82860.0callus| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitously expressed in the mature plant.
Functional Description ? help Back to Top
Source Description
UniProtMay have a role to play in formative events in ovule and embryo morphogenesis.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc12g010410.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010313840.10.0homeobox protein knotted-1-like LET12 isoform X2
SwissprotO223001e-144LET12_SOLLC; Homeobox protein knotted-1-like LET12
TrEMBLA0A3Q7J4K60.0A0A3Q7J4K6_SOLLC; Uncharacterized protein
STRINGSolyc12g010410.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14322472
Representative plantOGRP16717148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11060.11e-138KNOTTED1-like homeobox gene 4
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]