PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc12g008830.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GATA
Protein Properties Length: 294aa    MW: 32442.3 Da    PI: 10.1661
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc12g008830.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA602.9e-19119152134
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                         Cs C+ttkTplWR+gp g+k+LCnaCG+++rk +
  Solyc12g008830.1.1 119 CSDCNTTKTPLWRSGPKGPKSLCNACGIRQRKAR 152
                         *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.1E-17113164IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.43E-12116153No hitNo description
Gene3DG3DSA:3.30.50.101.0E-15117152IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.532117149IPR000679Zinc finger, GATA-type
CDDcd002027.51E-14118150No hitNo description
PfamPF003205.8E-17119152IPR000679Zinc finger, GATA-type
PROSITE patternPS003440119144IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MSLVSPYNNN YQFASSSTNS SCQNFFNIST TTNIQDQSGY DYQFHQPQHH HEVDNFASRS  60
SGSHDHVDKK NKGLKLTLWK KGGQKVKNLK VEDQKQQIIE TDYSSNSSSN NNIIPIRVCS  120
DCNTTKTPLW RSGPKGPKSL CNACGIRQRK ARRAAAAAAA ASTTPNNGTN FTSTETTTTT  180
TMKIKVQQQK HKITKVNANH VVPFKKRCKF LSSTTTPAPE PGLVPTPAPR VGSSSSSSFY  240
NNNNNDVQQK KKICFEDFFI NLSNNLAIHR VFPQDEKEAA ILLMALSSDL VHG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.145060.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc12g008830.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU6394042e-06S.lycopersicum DNA sequence from clone LE_HBa-120K13 on chromosome 4, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004251667.10.0putative GATA transcription factor 22
TrEMBLM0ZH971e-128M0ZH97_SOLTU; Uncharacterized protein
STRINGSolyc12g008830.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30972249
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.13e-19GATA family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]