PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc12g008350.1.1 | ||||||||
Common Name | DREB2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ERF | ||||||||
Protein Properties | Length: 300aa MW: 32994.6 Da PI: 4.617 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.8 | 4.8e-17 | 87 | 135 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a+ +++g Solyc12g008350.1.1 87 YVGVRMRA-WGKWVSEIREPKK---KSRIWLGTFATPEMAARAHDVAAMSIKG 135 99***998.**********854...6**********************99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.8E-11 | 86 | 135 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.918 | 86 | 143 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.7E-34 | 86 | 149 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.02E-30 | 87 | 143 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 7.2E-30 | 87 | 144 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-8 | 87 | 98 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-20 | 87 | 143 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.3E-8 | 109 | 125 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MIIMSTEQPN CSESTESSCN SSSSSSPSSP SSVLLQPLPQ INSKNRLKRC RGEEEVEEEE 60 DVVVNNPNPK KMNKNNNNGS STSVVSYVGV RMRAWGKWVS EIREPKKKSR IWLGTFATPE 120 MAARAHDVAA MSIKGTSAIL NFPQFSHLLP RPVTCSPRDI QNAAVKAAHM DHLNPKFSIL 180 PETSAATMTS SSSSLSLVSG VTSSSSSFQD DEESRPSPPE LIPEATGQLS EIVELPKLGS 240 SYELVESTQS LFESDEWWDN NYGNCEYFFG QDNYISSNME FTGLENVVST SFESFLWQH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-16 | 76 | 144 | 4 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.3984 | 0.0 | fruit| leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc12g008350.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF500012 | 0.0 | Lycopersicon esculentum dehydration responsive element binding protein (DREB2) mRNA, complete cds |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001234759.1 | 0.0 | dehydration responsive element binding protein | ||||
Swissprot | Q9LYD3 | 7e-46 | DREB3_ARATH; Dehydration-responsive element-binding protein 3 | ||||
TrEMBL | Q8GZF1 | 0.0 | Q8GZF1_SOLLC; Dehydration responsive element binding protein | ||||
STRING | Solyc12g008350.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA212 | 24 | 225 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32800.1 | 7e-43 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc12g008350.1.1 |
Entrez Gene | 544235 |
Publications ? help Back to Top | |||
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