PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc12g007070.1.1
Common NameLOC101248645
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HSF
Protein Properties Length: 370aa    MW: 41173.2 Da    PI: 6.3781
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc12g007070.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.43e-35101022103
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         F++k+y++++d++++ li w + +nsf+v+++ +f++++Lp yFkh+nf+SFvRQLn+YgF+kv+ ++         weF++++F +g+++
  Solyc12g007070.1.1  10 FVMKTYQMVNDPKIDGLIAWGTANNSFIVVEPLDFSQRILPVYFKHNNFSSFVRQLNTYGFRKVDPDK---------WEFANEWFLRGQTH 91 
                         9****************************************************************999.........************** PP

                         XXXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkkse 103
                         ll++i rkk++
  Solyc12g007070.1.1  92 LLKNIVRKKHS 102
                         ********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004156.6E-49699IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.71E-33799IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.2E-36899IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.2E-171033IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.6E-291099IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.2E-174860IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043404973IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.2E-176173IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MEANNIIAPF VMKTYQMVND PKIDGLIAWG TANNSFIVVE PLDFSQRILP VYFKHNNFSS  60
FVRQLNTYGF RKVDPDKWEF ANEWFLRGQT HLLKNIVRKK HSRNSCSQKQ DESEDEEILT  120
EISRLKQEQK ALEHEVENMT RRLEATEKRP QQMMAFLCKV VDDPEILPRI LMEKERSKRL  180
SLTNREKKRR LVISNSTSCS SVKSEDALGA TSSFHSPDAN FDKDAICQSS PSSGTPPPPT  240
AWLGSRPMIT YEPGTIQSIR SPDANFDKDT FYQSSPSSET PSTAWMNQQK VIIGGRPMMM  300
INEAYGSCPT MSSTLSTGSS ESGGFTAPPM DNFYGYDYGG GGRGGGGGTP ATEEASTPPY  360
PFSLFGGGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdg_A1e-237997110Heat shock factor protein 1
5hdn_A1e-237997110Heat shock factor protein 1
5hdn_B1e-237997110Heat shock factor protein 1
5hdn_C1e-237997110Heat shock factor protein 1
5hdn_D1e-237997110Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1340347GGRGGGGG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.124160.0flower| fruit| leaf| root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc12g007070.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004251603.10.0heat stress transcription factor C-1
SwissprotQ9LV524e-90HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLA0A3Q7J2P40.0A0A3Q7J2P4_SOLLC; Uncharacterized protein
STRINGSolyc12g007070.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68322333
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.14e-92heat shock transcription factor C1
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]