PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc12g006240.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

DBB

Protein Properties

Length: 270aa MW: 29703.8 Da PI: 4.2464

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc12g006240.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	19.7	1.7e-06	4	44	5	39
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +C+ ++e++ + +C+++ +lC +C + H+ H++ Solyc12g006240.1.1 4 ICEYCGEQRSIVYCRSDAACLCLSCDRNVHSAnalsqrHSR 44 7*****************************65777777776 PP
2	zf-B_box	27.1	8.7e-09	46	89	4	40
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvv 40 +C++++++++ C + + lC++C ++H + H+++ Solyc12g006240.1.1 46 LICERCNSQPAVVRCVEERISLCQNCDWSGHASsssgssmHKRQ 89 68*****************************7778888888875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	9.627	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	2.24E-7	4	47	No hit	No description
SMART	SM00336	4.4E-8	4	47	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	8.774	43	91	IPR000315	B-box-type zinc finger
CDD	cd00021	8.39E-4	47	73	No hit	No description
SMART	SM00336	2.3	48	91	IPR000315	B-box-type zinc finger

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MGYICEYCGE QRSIVYCRSD AACLCLSCDR NVHSANALSQ RHSRTLICER CNSQPAVVRC 60 VEERISLCQN CDWSGHASSS SGSSMHKRQA LNSYTGCPSA AELSNIWSFL LDDPSIGDTC 120 EQRMGSMSIN DNRPRDGQDP QGKDNSQNVC AAVEANDMSI SEKSNLLVES SMPTFDNKLH 180 NMEPPIGSSS KGCYMGAKGS NLFEEDPYCD NLIMDAVDLS IENYEELFGD SLNYPDELFE 240 NENLDSFFGM KDIKGADYSY HGVNATEVT*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.16182	0.0	floral bud\| leaf

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc12g006240.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004251549.1	0.0	zinc finger protein CONSTANS-LIKE 9-like
Refseq	XP_010313684.1	0.0	zinc finger protein CONSTANS-LIKE 9-like
Swissprot	Q9SSE5	6e-74	COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBL	A0A3Q7J2Z4	0.0	A0A3Q7J2Z4_SOLLC; Uncharacterized protein
STRING	Solyc12g006240.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1270	24	68
Representative plant	OGRP1375	13	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07650.4	1e-72	CONSTANS-like 9

Link Out ? help Back to Top
Phytozome	Solyc12g006240.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]