PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc12g006170.1.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 416aa    MW: 46185.6 Da    PI: 7.7401
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc12g006170.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY992.9e-3156112259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         +DgynWrKYGqK vkg+ef+rsYY+Ct+++C +kk+vers+ d+++++i+Y g+H+h+
  Solyc12g006170.1.1  56 EDGYNWRKYGQKLVKGNEFTRSYYKCTFPNCLAKKQVERSH-DGHITDIHYIGKHEHP 112
                         7****************************************.***************8 PP

2WRKY100.41.1e-31234291259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dg +WrKYGqK vkg+++prsYYrC+ agCpvkk+ver+++dpk+v++tYeg+H h+
  Solyc12g006170.1.1 234 NDGQRWRKYGQKIVKGNPNPRSYYRCSVAGCPVKKHVERASHDPKLVITTYEGQHVHD 291
                         8*******************************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.6250114IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-2651112IPR003657WRKY domain
SuperFamilySSF1182901.83E-2453112IPR003657WRKY domain
SMARTSM007742.6E-3455113IPR003657WRKY domain
PfamPF031061.1E-2356112IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.2E-34219293IPR003657WRKY domain
SuperFamilySSF1182902.48E-28225293IPR003657WRKY domain
PROSITE profilePS5081134.773228293IPR003657WRKY domain
SMARTSM007742.3E-36233292IPR003657WRKY domain
PfamPF031063.1E-25234290IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MEVFVSQSDL QRVSYTIKRE KALDKLQPRR NPDTSAHGLT SDQGTTLLKA PEKPSEDGYN  60
WRKYGQKLVK GNEFTRSYYK CTFPNCLAKK QVERSHDGHI TDIHYIGKHE HPETLSVPQM  120
SPEYVLPLQM KRPDIPIITA LEAEGEKSST PRETCEPSKP PEAPLALAIV SACDSVKVTP  180
LKRYKLENEV DKGDSADSKK QKKDTVATDD TPPVKSHSEP RHIVQTVSEV DIINDGQRWR  240
KYGQKIVKGN PNPRSYYRCS VAGCPVKKHV ERASHDPKLV ITTYEGQHVH DFPTSRPISQ  300
ISVAPDAGTA GIREDSRTES GEKKHVVESK TESGEMKHIR ESKTEAGETK HVKESKAESG  360
ENKHVGESKT ESDGNKHVEE SKPELVGNKH VGESISESGE NKHVGLDMAV HIGAN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-3256293877Probable WRKY transcription factor 4
2lex_A8e-3256293877Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.212680.0fruit| root| trichome
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc12g006170.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2095850.0Solanum lycopersicum DNA sequence from clone LE_HBa-26C13 on chromosome 12, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004251542.10.0WRKY transcription factor 1 isoform X2
RefseqXP_010313681.10.0WRKY transcription factor 1 isoform X2
SwissprotQ93WV06e-69WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A3Q7J1V60.0A0A3Q7J1V6_SOLLC; Uncharacterized protein
STRINGSolyc12g006170.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45582242
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.13e-72WRKY family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]