PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc11g073120.1.1 | ||||||||
Common Name | LOC101262486 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB | ||||||||
Protein Properties | Length: 218aa MW: 25938.4 Da PI: 9.246 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.2 | 1.2e-15 | 9 | 56 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd +l+ +vk++G ++W+ a+ g++Rt+k+c++rw +yl Solyc11g073120.1.1 9 RGPWTEEEDVQLLFYVKLFGDRRWDFLAKVSGLKRTGKSCRLRWVNYL 56 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.3 | 6.5e-17 | 63 | 107 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g++T++E+ l ++++ ++G++ W++Iar+++ gRt++++k++w++++ Solyc11g073120.1.1 63 GKMTPQEERLVLELHSKWGNR-WSRIARKIP-GRTDNEIKNYWRTHM 107 899******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.534 | 4 | 56 | IPR017930 | Myb domain |
SMART | SM00717 | 3.2E-13 | 8 | 58 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 9.16E-29 | 8 | 103 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.1E-14 | 9 | 56 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.1E-21 | 10 | 63 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.66E-8 | 11 | 56 | No hit | No description |
PROSITE profile | PS51294 | 26.925 | 57 | 111 | IPR017930 | Myb domain |
SMART | SM00717 | 4.1E-16 | 61 | 109 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-15 | 63 | 106 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.72E-10 | 64 | 107 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-23 | 64 | 110 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MVQEEIMRRG PWTEEEDVQL LFYVKLFGDR RWDFLAKVSG LKRTGKSCRL RWVNYLNPDL 60 KHGKMTPQEE RLVLELHSKW GNRWSRIARK IPGRTDNEIK NYWRTHMRKK AQEQRKKSSV 120 SPSSSSSSSI THEENERNFY DTGGLKLLQV EGEKKSSDQE QDGKSMKVYS MDEIWKDIEL 180 LEENEEKMNK PIMGSILPLW DYSLDSLWKD FDWNNFR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-28 | 9 | 111 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 5e-28 | 9 | 111 | 58 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 5e-28 | 9 | 111 | 58 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 2e-28 | 7 | 111 | 25 | 128 | MYB TRANSFORMING PROTEIN |
1mse_C | 1e-28 | 6 | 111 | 1 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 1e-28 | 6 | 111 | 1 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.5017 | 0.0 | cell culture| fruit| leaf| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mainly expressed in leaves and seedlings, and to a lower extent, in roots, stems and inflorescences. Isoform MYB48-1, isoform MYB48-3 and isoform MYB48-4 are present in all of these organs, but isoform MYB48-2 is confined to leaves. {ECO:0000269|PubMed:16531467}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc11g073120.1.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT013110 | 0.0 | Lycopersicon esculentum clone 114397F, mRNA sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004251308.1 | 1e-159 | transcription factor MYB48 | ||||
Swissprot | Q9LX82 | 3e-75 | MYB48_ARATH; Transcription factor MYB48 | ||||
TrEMBL | A0A3Q7J1W7 | 1e-157 | A0A3Q7J1W7_SOLLC; Uncharacterized protein | ||||
STRING | Solyc11g073120.1.1 | 1e-158 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46130.1 | 8e-73 | myb domain protein 48 |
Link Out ? help Back to Top | |
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Phytozome | Solyc11g073120.1.1 |
Entrez Gene | 101262486 |