PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc11g073120.1.1
Common NameLOC101262486
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 218aa    MW: 25938.4 Da    PI: 9.246
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc11g073120.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.21.2e-15956148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg+WT+eEd +l+ +vk++G ++W+  a+  g++Rt+k+c++rw +yl
  Solyc11g073120.1.1  9 RGPWTEEEDVQLLFYVKLFGDRRWDFLAKVSGLKRTGKSCRLRWVNYL 56
                        89********************************************97 PP

2Myb_DNA-binding53.36.5e-1763107248
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         g++T++E+ l ++++ ++G++ W++Iar+++ gRt++++k++w++++
  Solyc11g073120.1.1  63 GKMTPQEERLVLELHSKWGNR-WSRIARKIP-GRTDNEIKNYWRTHM 107
                         899******************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.534456IPR017930Myb domain
SMARTSM007173.2E-13858IPR001005SANT/Myb domain
SuperFamilySSF466899.16E-298103IPR009057Homeodomain-like
PfamPF002493.1E-14956IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-211063IPR009057Homeodomain-like
CDDcd001672.66E-81156No hitNo description
PROSITE profilePS5129426.92557111IPR017930Myb domain
SMARTSM007174.1E-1661109IPR001005SANT/Myb domain
PfamPF002492.1E-1563106IPR001005SANT/Myb domain
CDDcd001676.72E-1064107No hitNo description
Gene3DG3DSA:1.10.10.601.6E-2364110IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MVQEEIMRRG PWTEEEDVQL LFYVKLFGDR RWDFLAKVSG LKRTGKSCRL RWVNYLNPDL  60
KHGKMTPQEE RLVLELHSKW GNRWSRIARK IPGRTDNEIK NYWRTHMRKK AQEQRKKSSV  120
SPSSSSSSSI THEENERNFY DTGGLKLLQV EGEKKSSDQE QDGKSMKVYS MDEIWKDIEL  180
LEENEEKMNK PIMGSILPLW DYSLDSLWKD FDWNNFR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-2891114105MYB PROTO-ONCOGENE PROTEIN
1h88_C5e-28911158159MYB PROTO-ONCOGENE PROTEIN
1h89_C5e-28911158159MYB PROTO-ONCOGENE PROTEIN
1h8a_C2e-28711125128MYB TRANSFORMING PROTEIN
1mse_C1e-2861111105C-Myb DNA-Binding Domain
1msf_C1e-2861111105C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.50170.0cell culture| fruit| leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mainly expressed in leaves and seedlings, and to a lower extent, in roots, stems and inflorescences. Isoform MYB48-1, isoform MYB48-3 and isoform MYB48-4 are present in all of these organs, but isoform MYB48-2 is confined to leaves. {ECO:0000269|PubMed:16531467}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc11g073120.1.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0131100.0Lycopersicon esculentum clone 114397F, mRNA sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004251308.11e-159transcription factor MYB48
SwissprotQ9LX823e-75MYB48_ARATH; Transcription factor MYB48
TrEMBLA0A3Q7J1W71e-157A0A3Q7J1W7_SOLLC; Uncharacterized protein
STRINGSolyc11g073120.1.11e-158(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.18e-73myb domain protein 48
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  5. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]