PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Solyc11g072790.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | WOX | ||||||||
Protein Properties | Length: 210aa MW: 24032.5 Da PI: 8.6982 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.2 | 1.6e-19 | 3 | 64 | 1 | 57 |
TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r +R+++t+eql Lee+++k r+p+a++++ ++ +l +++ ++V++WFqN++a++++ Solyc11g072790.1.1 3 RPTRWSPTPEQLMFLEEMYRKgLRNPNATQIQSITCHLssfgKIEGKNVFYWFQNHKARDRQ 64 569*****************99*************************************996 PP | |||||||
2 | Wus_type_Homeobox | 111.5 | 4.5e-36 | 5 | 65 | 4 | 64 |
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 tRW+PtpeQ++ Lee+y++Glr+Pn+ +iq it +L+++Gkie+kNVfyWFQN+kaR+rqk Solyc11g072790.1.1 5 TRWSPTPEQLMFLEEMYRKGLRNPNATQIQSITCHLSSFGKIEGKNVFYWFQNHKARDRQK 65 8***********************************************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.333 | 1 | 65 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.5E-5 | 2 | 69 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.4E-17 | 3 | 64 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.48E-11 | 3 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.90E-4 | 3 | 65 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-6 | 6 | 64 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0008283 | Biological Process | cell proliferation | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0009943 | Biological Process | adaxial/abaxial axis specification | ||||
GO:0009947 | Biological Process | centrolateral axis specification | ||||
GO:0010865 | Biological Process | stipule development | ||||
GO:0048513 | Biological Process | animal organ development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 210 aa Download sequence Send to blast |
MGRPTRWSPT PEQLMFLEEM YRKGLRNPNA TQIQSITCHL SSFGKIEGKN VFYWFQNHKA 60 RDRQKLKKKL LAQMNQQQIL AQYPIDAHST TTTTTNSNNN TLFHCPTTDQ YQICPLTSTT 120 ALLQEGEIKE ASSQVMTYLY PMDLSKPADQ NMENCMIRPY GKDWIVMMNI NPNNLPYCVN 180 RPLKTLPLFP ITTTDDLKDQ TTSSTSLSL* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Solyc11g072790.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC215481 | 8e-14 | Solanum lycopersicum chromosome 2 clone C02SLm0057H03, complete sequence | |||
GenBank | AJ538329 | 8e-14 | Lycopersicon esculentum mRNA for wuschel protein (wus gene) | |||
GenBank | JF284846 | 8e-14 | Solanum lycopersicum clone Le_HBa0139K19 genomic sequence, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004251286.1 | 1e-156 | WUSCHEL-related homeobox 3 | ||||
TrEMBL | A0A3Q7J211 | 1e-155 | A0A3Q7J211_SOLLC; Uncharacterized protein | ||||
STRING | Solyc11g072790.1.1 | 1e-156 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2959 | 19 | 51 | Representative plant | OGRP5580 | 11 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G28610.1 | 2e-38 | WOX family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Solyc11g072790.1.1 |
Publications ? help Back to Top | |||
---|---|---|---|
|