PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc11g069850.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 566aa    MW: 64057.4 Da    PI: 5.7729
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc11g069850.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding316e-10448496348
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                          W+t E ++lv++v ++G g+W+ I +++     +R++ ++k++w+++l
  Solyc11g069850.1.1 448 YWSTTEVLKLVEGVSKYGVGRWSDIKKMFFqssVHRSPADLKDKWRNLL 496
                         6****************************99****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.414440500IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.0E-13441501IPR009057Homeodomain-like
SuperFamilySSF466893.74E-15443498IPR009057Homeodomain-like
SMARTSM007172.3E-10445498IPR001005SANT/Myb domain
CDDcd116608.81E-18447497No hitNo description
PfamPF002492.7E-8448496IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031627Biological Processtelomeric loop formation
GO:0000783Cellular Componentnuclear telomere cap complex
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    Send to blast
MDSFTYNWKT PNECAKSSQQ EPEQVVSAAS IYFASEEEAI GVEQLFAEPE YGDIVDTLLD  60
FNTCACSLPE SYTKEFSASD SVVTNSDRAF PLDAVQRGLS EVDKTREKFL DGLSNGYNEN  120
HCSISCEDYL LDIELEEEIP TLDDVTRDVS CIENVNLENK LADSEQRNCD VHVLKLSDAS  180
TSFDHDALDK FEDMSTDKLL EVFRNMFGHQ TSVADKQWLE SHMIFGLENQ EMSDKNYCFP  240
KTSLDSSENQ GVKVLPACQN LLKVSTAFAS IFNFRTKPRA QHVKRREHIQ WNSFKCLSSA  300
AGEIQLDFPD KWDSKELAKE NLKCDGTKLG ISEQHLKCKP SRGGFGRRYY HRGAKVSSQG  360
LGKRNFQVGC IQIPPGLPIE ERLIKREGHL SKDCRANRAY NSNIHSVEAQ DDPSGTLSDQ  420
STDSSSEDDW TIGSETRGTN QDRKHNKYWS TTEVLKLVEG VSKYGVGRWS DIKKMFFQSS  480
VHRSPADLKD KWRNLLRASC QRLQSRRGVF YSSYQLNTSN LSFFHFHFNS KLILFYVPLQ  540
IIIGSSCGKA TSSLSRFISI YDSRS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc11g069850.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004251409.10.0uncharacterized protein LOC101252053
RefseqXP_025884043.10.0uncharacterized protein LOC101252053
TrEMBLA0A3Q7J0J20.0A0A3Q7J0J2_SOLLC; Uncharacterized protein
STRINGSolyc11g069850.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA134241214
Representative plantOGRP16451536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.22e-18TRF-like 6
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]