PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc11g069510.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GATA
Protein Properties Length: 327aa    MW: 35678.8 Da    PI: 9.161
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc11g069510.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.21.3e-19210243134
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                         C++C +tkTp+WR+gp g+ktLCnaCG++yr+ +
  Solyc11g069510.1.1 210 CTHCEVTKTPQWREGPLGPKTLCNACGVRYRSGR 243
                         *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004016.6E-15204254IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.358208240IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.4E-14209241IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.24E-14209267No hitNo description
CDDcd002027.92E-17209266No hitNo description
PROSITE patternPS003440210235IPR000679Zinc finger, GATA-type
PfamPF003201.9E-17210243IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MDEIPTGPIV DDDFDDILNF LDMPMESLEG DVLGGVEWDV SESKGFGPIP TEALMDFLPL  60
PQSNIGNRRV NAVANSHPPI KFTEVQGTGT FQTQSPVSVL EGSNSCSGGK SVPIKHDPVI  120
PVRPRSKRAR PSAVNPWVLM APISSTRVAS KKISDARKTK ERRRRLSLLS GAKEPMKNYV  180
QQISDAAPPV SDVSKKKITS TQQSSFFKKC THCEVTKTPQ WREGPLGPKT LCNACGVRYR  240
SGRLFPEYRP AASPTFVPSV HSNSHRKVVE MRKKTLYGGA GEVEEPPKVI MGRSSEALPE  300
PTIAADPAMS PAPEFVPMSS YLFDVY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc11g069510.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1826482e-06Solanum lycopersicum chromosome 5 clone C05HBa0239D11, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004251141.10.0GATA transcription factor 11-like isoform X1
TrEMBLA0A3Q7JPP20.0A0A3Q7JPP2_SOLLC; Uncharacterized protein
STRINGSolyc11g069510.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31342149
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.27e-40GATA transcription factor 11
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]