PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc11g067280.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | G2-like | ||||||||
Protein Properties | Length: 295aa MW: 32071.7 Da PI: 6.6524 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 108.1 | 4.5e-34 | 16 | 70 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl Solyc11g067280.1.1 16 KQRLRWTNELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 70 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.337 | 13 | 73 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.4E-18 | 15 | 70 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.7E-32 | 15 | 71 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.7E-26 | 16 | 71 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.2E-9 | 18 | 69 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 2.5E-22 | 102 | 148 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MDPSCGGNNS SSLASKQRLR WTNELHERFV DAVAQLGGPD RATPKGVLRV MGVQGLTIYH 60 VKSHLQKYRL AKYLPDSSSD GKNSDKKEPR DMLSSLDGSS GVEITTALKL QMEVQKRLHE 120 QLEVQKQLQL RIEAQGKYLK KIIEEQQRLS GVLSDVPGSG VTALPTGDNG PESDSRTDPG 180 TPAPSSEAPH VDKPVNAHTS TKSLSMDESF SSHHSPLSPD SDCQETSLME SPNGESSSKK 240 QRVGNVALPH QILESSVSPP YQQPHSVFMM RDQFNHTSGL SLDIEDHKVS GSNI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 4e-24 | 16 | 73 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 4e-24 | 16 | 73 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 4e-24 | 16 | 73 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 4e-24 | 16 | 73 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 4e-24 | 16 | 73 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 4e-24 | 16 | 73 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 4e-24 | 16 | 73 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 4e-24 | 16 | 73 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 4e-24 | 16 | 73 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 4e-24 | 16 | 73 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 4e-24 | 16 | 73 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 4e-24 | 16 | 73 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.10474 | 0.0 | callus| flower| fruit| leaf| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc11g067280.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001307345.1 | 0.0 | MYB-CC type transfactor | ||||
Refseq | XP_010313350.1 | 0.0 | MYB-CC type transfactor isoform X1 | ||||
Swissprot | Q9SJW0 | 1e-110 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | A0A3Q7J036 | 0.0 | A0A3Q7J036_SOLLC; Uncharacterized protein | ||||
STRING | Solyc11g067280.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2796 | 24 | 51 | Representative plant | OGRP78 | 17 | 262 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 4e-96 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc11g067280.1.1 |
Publications ? help Back to Top | |||
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