PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc11g066400.1.1
Common NameLOC101265309
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 295aa    MW: 31986.6 Da    PI: 8.0268
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc11g066400.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00065136158123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y+C+ C+++F++   L  H  +H
  Solyc11g066400.1.1 136 YECKTCNRTFNSFQALGGHRASH 158
                         99**********99999998887 PP
2zf-C2H213.70.00019212234123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++Cg  Fs+   L  H+r+H
  Solyc11g066400.1.1 212 HECSICGSEFSSGQALGGHMRRH 234
                         78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139128.0E-13135160IPR007087Zinc finger, C2H2
SuperFamilySSF576676.8E-9135158No hitNo description
PROSITE profilePS5015710.907136163IPR007087Zinc finger, C2H2
SMARTSM003550.065136158IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280138158IPR007087Zinc finger, C2H2
SuperFamilySSF576676.8E-9207234No hitNo description
PROSITE profilePS501579.951212239IPR007087Zinc finger, C2H2
PfamPF139127.8E-12212236IPR007087Zinc finger, C2H2
SMARTSM003550.02212234IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280214234IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MEVCQNLSER RSCAFKGKRT KRARPSSPLN TAGTTTTTTT ITTITTSSSI ACGSNDGSRG  60
VDGGDFFYNS PTTSTTQISK LSTCEEDEDM ANCLILLAQS GCGHKVEEVK KEKINNRKFA  120
EIANSSTTGK AGFFVYECKT CNRTFNSFQA LGGHRASHKK PKTILEDKKS VTDTTATATA  180
AADHDNLHDQ GQERLNKISN TTIQSNVKTK IHECSICGSE FSSGQALGGH MRRHRQPPTT  240
TMIAASNVSE SSHDEKSRRN VLCLDLNLPA PVEDDHKFEQ SLVFSAAPLV DCYF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.125860.0fruit
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO94320620.0
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc11g066400.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004251369.10.0zinc finger protein ZAT5
TrEMBLA0A3Q7IZ650.0A0A3Q7IZ65_SOLLC; Uncharacterized protein
STRINGSolyc11g066400.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12622480
Representative plantOGRP23501035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.11e-51C2H2 family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]