PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc11g064990.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | HSF | ||||||||
Protein Properties | Length: 252aa MW: 29828.8 Da PI: 7.7717 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 117.6 | 7.5e-37 | 24 | 116 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 Fl+k+y++++d++ ++++sw e +n+fvv+ + efak++Lp+yFkh+nf+SFvRQLn+YgFkk+ e+ weF++++Fkkg+k+ Solyc11g064990.1.1 24 FLTKTYQLVDDPSSDHIVSWGEYENTFVVWRPPEFAKDLLPNYFKHNNFSSFVRQLNTYGFKKIVPER---------WEFANEHFKKGQKH 105 9****************************************************************999.........************** PP XXXXXXXXXXX CS HSF_DNA-bind 93 llekikrkkse 103 ll++i+r++s+ Solyc11g064990.1.1 106 LLCEIQRRRST 116 ********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 3.6E-58 | 20 | 113 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 7.2E-38 | 21 | 113 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 6.8E-34 | 21 | 113 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 7.3E-32 | 24 | 113 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.0E-19 | 24 | 47 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.0E-19 | 62 | 74 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 63 | 87 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.0E-19 | 75 | 87 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MASSSTCGDQ EMIFTMQKAM VAPFLTKTYQ LVDDPSSDHI VSWGEYENTF VVWRPPEFAK 60 DLLPNYFKHN NFSSFVRQLN TYGFKKIVPE RWEFANEHFK KGQKHLLCEI QRRRSTPQQL 120 HHLTPYQEHI TRSIYHQEIQ NPSSTVDHDI LLALTQDNER LRKRNIVLLS ELTRMKNLYN 180 DIIYFIQNHV KPVEEKSRVF LLNGGLNHHH RQVHNEDHEE PKSDKVKLFG VSLCGKKRLY 240 HERIDQEELE C* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 6e-23 | 21 | 116 | 17 | 123 | Heat shock factor protein 1 |
5d5u_B | 9e-23 | 21 | 113 | 26 | 129 | Heat shock factor protein 1 |
5d5v_B | 9e-23 | 21 | 113 | 26 | 129 | Heat shock factor protein 1 |
5d5v_D | 9e-23 | 21 | 113 | 26 | 129 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc11g064990.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004251349.3 | 0.0 | heat stress transcription factor B-4b-like | ||||
Swissprot | Q9C635 | 4e-78 | HSFB4_ARATH; Heat stress transcription factor B-4 | ||||
TrEMBL | A0A3Q7IYP8 | 0.0 | A0A3Q7IYP8_SOLLC; Uncharacterized protein | ||||
STRING | Solyc11g064990.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2721 | 24 | 50 | Representative plant | OGRP96 | 17 | 233 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46264.1 | 2e-80 | heat shock transcription factor B4 |
Link Out ? help Back to Top | |
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Phytozome | Solyc11g064990.1.1 |
Publications ? help Back to Top | |||
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