PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc11g064950.1.1

Common Name

LOC101262685

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bZIP

Protein Properties

Length: 325aa MW: 36170.9 Da PI: 9.0819

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc11g064950.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.9	1.4e-10	37	80	2	45
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k+ k rr+++NReAAr+sR+RKka++++Le +L++ ++L Solyc11g064950.1.1 37 KDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRMKLTQLEQEL 80 567899*************************9888888777655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.5E-8	35	83	No hit	No description
SMART	SM00338	3.3E-9	36	99	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.1E-7	38	81	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.461	38	82	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.56E-7	40	83	No hit	No description
PROSITE pattern	PS00036	0	43	58	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.2E-31	123	197	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009410	Biological Process	response to xenobiotic stimulus
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MADISPSTST DADTEDKNRF LNQQLCAVAS DGSDRPKDQK TLRRLAQNRE AARKSRLRKK 60 AYVQQLESSR MKLTQLEQEL QRARQQGIFI SGSGDQSQSM SGNGALAFDV EYARWLEEQN 120 RRINELRGAV NSHAGDAELR IIVDGILAHY DDIFRIKGDA AKADVFHILS GMWKTPAERC 180 FLWLGGFRSS ELLKLLINQL EPLTEQQLLA INNLQQSSQQ AEDALSQGME ALQQSLAETL 240 AGSLGPSGSS GNVANYMGQM AMAMGKLGTL EGFIRQADNL RQQTLQQMHR ILTTRQSARA 300 LLAITDYFSR LRALSSLWLA RPRE*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.12355	0.0	callus\| cell culture\| flower\| fruit\| leaf\| root\| stem\| trichome

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00492	DAP	Transfer from AT5G06950	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc11g064950.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC171735	1e-78	Solanum lycopersicum chromosome 11 clone C11HBa0119D16, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006356348.1	0.0	PREDICTED: transcription factor HBP-1b(c38)-like
Refseq	XP_015056595.1	0.0	transcription factor TGA2.2-like
Refseq	XP_025883912.1	0.0	transcription factor TGA2.2
Swissprot	Q41558	0.0	HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBL	A0A0V0I883	0.0	A0A0V0I883_SOLCH; Putative transcription factor HBP-1b(C1)-like
TrEMBL	M1AK43	0.0	M1AK43_SOLTU; Uncharacterized protein
STRING	Solyc11g064950.1.1	0.0	(Solanum lycopersicum)
STRING	PGSC0003DMT400024428	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA820	23	85
Representative plant	OGRP722	16	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12250.2	1e-147	TGACG motif-binding factor 6

Link Out ? help Back to Top
Phytozome	Solyc11g064950.1.1
Entrez Gene	101262685

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]