PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc11g051000.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | FAR1 | ||||||||
Protein Properties | Length: 193aa MW: 22518.6 Da PI: 10.0614 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 47.5 | 6.1e-15 | 2 | 62 | 29 | 90 |
FAR1 29 tkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 t+r+ +C+keg+ +k++ +++r+etrt+C a++ ++++++gk+ v+++e++HnH+l+ Solyc11g051000.1.1 2 TSRKITCYKEGYGGLDKRD-MLVKKPRKETRTSCLAHMIISRQSNGKFSVISFEEKHNHPLV 62 78999***********999.999*************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.7E-12 | 2 | 62 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MTSRKITCYK EGYGGLDKRD MLVKKPRKET RTSCLAHMII SRQSNGKFSV ISFEEKHNHP 60 LVHQSLGKAS LGFTKRDHKN YLRDKRKESL QYGVARSLVN YFEERYEANF LNAWEEILEK 120 CDLKDNSWLK NTFAIREKWS MSYGRNIFSA SMQSTQLSES FNGSLKGYLK SDLDIVQFFK 180 NFQRADDDKR AN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc11g051000.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC247075 | 1e-147 | Solanum lycopersicum strain Heinz 1706 chromosome 11 clone slm-22d4 map 11, complete sequence | |||
GenBank | AC247140 | 1e-147 | Solanum lycopersicum strain Heinz 1706 chromosome 11 clone slm-57f15 map 11, complete sequence | |||
GenBank | AC247141 | 1e-147 | Solanum lycopersicum strain Heinz 1706 chromosome 11 clone slm-10l5 map 11, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016481065.1 | 2e-46 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_018632604.1 | 2e-46 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1 | ||||
Refseq | XP_018632605.1 | 2e-46 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X2 | ||||
TrEMBL | K4D8R2 | 1e-141 | K4D8R2_SOLLC; Uncharacterized protein | ||||
STRING | Solyc11g051000.1.1 | 1e-142 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3021 | 17 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 2e-11 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Solyc11g051000.1.1 |
Publications ? help Back to Top | |||
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