PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc11g045640.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | TCP | ||||||||
Protein Properties | Length: 220aa MW: 25378 Da PI: 5.0787 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 96.2 | 6.3e-30 | 97 | 192 | 1 | 89 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.. 88 a+g+kdrhsk++T+++++d RvRls ++a++f+d+qd+LG+d++sk+i+WL+ +ak+ai++l + +++ +s ++++ + s ++++s+ Solyc11g045640.1.1 97 ATGRKDRHSKVSTAKDPKDLRVRLSPNTAIQFYDVQDRLGYDRPSKAIDWLIIEAKAAIDALGEFPNNFHSTKlNPKKMQYSFDQEQSPef 187 589***********************************************************99954444333566666666665555544 PP TCP 89 ....k 89 + Solyc11g045640.1.1 188 sqenR 192 32221 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 7.1E-27 | 98 | 192 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.466 | 100 | 158 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MSNLNPPMNH QCQVSDEEDG SEEEEEEEEE VFQENDIGNL QSHYQNQQMP QSVYKKQEKW 60 ANFTVSEQEL NKGTRRMKPK RAKTDVIEGH GGRIIRATGR KDRHSKVSTA KDPKDLRVRL 120 SPNTAIQFYD VQDRLGYDRP SKAIDWLIIE AKAAIDALGE FPNNFHSTKL NPKKMQYSFD 180 QEQSPEFSQE NRGVPKSEYG VQEKQQEVNY DIPNLFSLN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 3e-16 | 105 | 158 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 3e-16 | 105 | 158 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 74 | 80 | RRMKPKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc11g045640.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC243474 | 0.0 | Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-56p20 map 1, complete sequence | |||
GenBank | AC246078 | 0.0 | Solanum lycopersicum strain Heinz 1706 chromosome 1 clone slm-12e23 map 1, complete sequence | |||
GenBank | AC246581 | 0.0 | Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-67d8 map 1, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004250838.1 | 1e-158 | transcription factor TCP4-like | ||||
TrEMBL | A0A3Q7JMM0 | 1e-162 | A0A3Q7JMM0_SOLLC; Uncharacterized protein | ||||
STRING | Solyc11g045640.1.1 | 1e-163 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4112 | 21 | 45 | Representative plant | OGRP180 | 15 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53230.1 | 8e-35 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Solyc11g045640.1.1 |
Publications ? help Back to Top | |||
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