PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc11g045450.1.1
Common NameLOC104644667
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 298aa    MW: 34538.8 Da    PI: 4.529
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc11g045450.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.31.2e-1215861287
                        HTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3 12 ksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87
                        ++ rl++p  fae+h   ++       + l+ ++g+ Wev++  + ++g+++l+kGWkeF +   + ++  ++F+++ r
  Solyc11g045450.1.1 15 ELYRLRIPPVFAESHckdML-----NHVFLQAPHGKAWEVEV--EHSQGQIWLAKGWKEFSNLYAISVKQLLMFTYNAR 86
                        55689**********54333.....36***************..9******************************9764 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.35E-15296IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.5E-17397IPR015300DNA-binding pseudobarrel domain
CDDcd100177.24E-10494No hitNo description
PROSITE profilePS5086310.785497IPR003340B3 DNA binding domain
SMARTSM010192.0E-4697IPR003340B3 DNA binding domain
PfamPF023621.7E-91785IPR003340B3 DNA binding domain
SuperFamilySSF1019362.94E-7228291IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.2E-7228292IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.374230297IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MSHPKFIQII CSLDELYRLR IPPVFAESHC KDMLNHVFLQ APHGKAWEVE VEHSQGQIWL  60
AKGWKEFSNL YAISVKQLLM FTYNARDLLD VTIFGMDTVE IKYPIQDTES YDSMDIFYHS  120
TENLSHGPLV AKIIQKRQEG EEKDDIRLNL QTDANVIEGE EEYIPVNLQI NANIIEEEEE  180
DIPVNLQTSA NELAEEESQD QEVEEDNHRS EEVGQKNNNR HSVVNLADDT PYFEIVIKKT  240
HTTYLTIPIR FANRTNIVNM KNMRLVNGEG IRWGVEIEYT KCRAIIKKGW TEDGEWK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc11g045450.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025883827.11e-160B3 domain-containing protein At3g18960-like
TrEMBLA0A3Q7JMK10.0A0A3Q7JMK1_SOLLC; Uncharacterized protein
STRINGSolyc11g045450.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7499524
Representative plantOGRP1718538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-12B3 family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]