PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc11g042560.1.1
Common NameLOC101256347
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 174aa    MW: 19894.4 Da    PI: 6.1587
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc11g042560.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.81.1e-171363256
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                         y+GVr +k +g+Wv+eIr+p   gk++r++lg++  ae+Aa+a++ a+  l+ge
  Solyc11g042560.1.1 13 VYRGVRKRK-WGKWVSEIREP---GKKTRIWLGSYQKAEMAAAAYDVAAFHLKGE 63
                        59****999.**********8...557***********************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.6E-111363IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.6E-291373IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-201372IPR016177DNA-binding domain
SMARTSM003803.8E-301378IPR001471AP2/ERF domain
PROSITE profilePS5103221.9441372IPR001471AP2/ERF domain
CDDcd000187.98E-191474No hitNo description
PRINTSPR003673.2E-91425IPR001471AP2/ERF domain
PRINTSPR003673.2E-93652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MENDQESKNN MDVYRGVRKR KWGKWVSEIR EPGKKTRIWL GSYQKAEMAA AAYDVAAFHL  60
KGERPNLRLN FPELIHTFPK PSSSRPEDVQ MAAHEAAMRF KPSIDDHPEE CGVGQVRVGL  120
SPSQIQAINE SPLDSPKMWM ELAGALLPVR EYTCPTDYFE DETPHHHESI WDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-151477668ATERF1
3gcc_A4e-151477668ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc11g042560.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004250806.11e-129ethylene-responsive transcription factor ERF022-like
SwissprotQ9LQ288e-47ERF22_ARATH; Ethylene-responsive transcription factor ERF022
TrEMBLA0A3Q7IWN01e-128A0A3Q7IWN0_SOLLC; Uncharacterized protein
STRINGSolyc11g042560.1.11e-128(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33760.13e-48ERF family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]