PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc11g020660.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 313aa MW: 35558.7 Da PI: 4.6066 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 34.7 | 2.3e-11 | 5 | 33 | 14 | 42 |
HHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 14 skRrngilKKAeELSvLCdaevaviifss 42 kR++ + KK +ELS+LCd+++++ii+ + Solyc11g020660.1.1 5 VKRKASLVKKISELSILCDIKACMIIYDE 33 7*************************965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 10.232 | 1 | 35 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 0.0081 | 2 | 43 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.27E-13 | 3 | 61 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.6E-9 | 5 | 35 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MNTSVKRKAS LVKKISELSI LCDIKACMII YDEGNSNCEM WPNEVKELIN VYKDQPFEGR 60 TKRGKTLSNY FKDEIKVEKD LDSRFDYFEN DEKKKADAIN VEKYPTWDSR FDYLSQKEIQ 120 NLVGVISKRM ENAKGRIELL KSMNGSCSLS HRQQIWDYNN LMNQTSPWPI SDHVNSFNNF 180 FQSNIGVNSM MESENWLAND EIGSSLAMHP MGNNYGIIDS STTMMQPMGN NEIGSSSTMQ 240 QPMFQYPFMY NGSTHVIGSS STMQPPMGQY PFTNNDDSTG DIGSSSMQPI GNNNEIGPMD 300 NDSTYDSCTF YY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc11g020660.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004250617.1 | 0.0 | agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A3Q7ITU5 | 0.0 | A0A3Q7ITU5_SOLLC; Uncharacterized protein | ||||
STRING | Solyc11g020660.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6342 | 12 | 32 | Representative plant | OGRP3677 | 6 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G55690.1 | 4e-13 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc11g020660.1.1 |
Publications ? help Back to Top | |||
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