PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc11g019990.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | G2-like | ||||||||
Protein Properties | Length: 344aa MW: 39301.3 Da PI: 5.4039 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 52.4 | 1.2e-16 | 133 | 179 | 4 | 51 |
G2-like 4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 +Wt++LH +F++av+qL + + Pk il++m+ +gLt+ +v+SHLQ Solyc11g019990.1.1 133 TKWTNNLHVKFMKAVKQL-EKGRCYPKDILHVMNFPGLTRMQVASHLQ 179 68****************.999************************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.2300 | 4.6E-6 | 15 | 102 | No hit | No description |
SuperFamily | SSF52172 | 1.46E-6 | 16 | 95 | IPR011006 | CheY-like superfamily |
SuperFamily | SSF46689 | 1.15E-12 | 128 | 180 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.3E-16 | 129 | 179 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.2E-14 | 133 | 180 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 344 aa Download sequence Send to blast |
MADMTSTTML MLSKEKQKVD VMILNIHSSN MPTFELLAQA VALDIISLIV YDDYNELEAK 60 KTLDMGAYLY LKKPFDENLV KYLWQFVWRK RILKEKAKEG SIADNDMGGE NEEQFEKKKD 120 VSKTEVVRRK DYTKWTNNLH VKFMKAVKQL EKGRCYPKDI LHVMNFPGLT RMQVASHLQV 180 QPHYLGIGNP FYNPFSSAQK NIGGELKQQH NPIFGMLGSQ EQENPIMKNT HYGPNSVLNS 240 EDHHSEKEHN FVLNMAKGAT NMNANFQQYQ GSNSCVMENC DVYFSLNNVD YVFQSLGPLG 300 ANLPNEQDSE FDQVYSDDQN LGPPDANLPN EQGSEFDQVY SHD* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc11g019990.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC246743 | 8e-12 | Solanum lycopersicum strain Heinz 1706 chromosome 2 clone hba-11o22 map 2, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019066444.1 | 0.0 | two-component response regulator ORR21-like | ||||
TrEMBL | M1CN23 | 3e-89 | M1CN23_SOLTU; Uncharacterized protein | ||||
STRING | Solyc11g019990.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA813 | 23 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16110.1 | 1e-19 | response regulator 2 |
Link Out ? help Back to Top | |
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Phytozome | Solyc11g019990.1.1 |
Publications ? help Back to Top | |||
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