PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc11g017470.1.1

Common Name

LOC101267475

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NAC

Protein Properties

Length: 292aa MW: 33463.9 Da PI: 7.1619

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc11g017470.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	166.3	1e-51	7	130	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 p+GfrFhPtdeelv++yL++k++++++ + +i+e+d+yk++PwdLp + +ekewyfFs+rd+ky++g+r+nra+ sgyWkatg dk++ Solyc11g017470.1.1 7 PAGFRFHPTDEELVMHYLCRKCDAQPIAV-PIIAEIDLYKYNPWDLPDLALYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPI 96 89***********************99.88***********65556799******************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + + +g+kk Lvfy g+apkgekt+W+mheyrl Solyc11g017470.1.1 97 GR--PKSMGIKKALVFYAGKAPKGEKTNWIMHEYRL 130 98..6789************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.27E-61	3	157	IPR003441	NAC domain
PROSITE profile	PS51005	58.955	6	157	IPR003441	NAC domain
Pfam	PF02365	2.7E-27	7	130	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009788	Biological Process	negative regulation of abscisic acid-activated signaling pathway
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MVELQFPAGF RFHPTDEELV MHYLCRKCDA QPIAVPIIAE IDLYKYNPWD LPDLALYGEK 60 EWYFFSPRDR KYPNGSRPNR AAGSGYWKAT GADKPIGRPK SMGIKKALVF YAGKAPKGEK 120 TNWIMHEYRL AHVDRSARNK NNSLRLDDWV LCRIYNKKGT IEKNQLNIRK MNGEMSPAVS 180 EGDVKPEIVP ISVSTNPSST SYHVYNDFTY FNSPDSLTKL HADSSCSEHV PSPEFTYEKE 240 VQSEPKPKPS EWEKTALDFP FNYTDATASE LQSCYEMSPL QDIFMYLQKP F*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-80	2	163	11	174	Stress-induced transcription factor NAC1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.3095	0.0	flower\| fruit\| leaf\| root

Function -- GeneRIF ? help Back to Top
These results suggested that ethylene-dependent and -independent processes are regulated by SlNAC4 in the fruit ripening regulatory network.[SlNAC4] [PMID: 24265273] Data show the important role of NAC-type transcription factor SlNAC4 functions as a stress-responsive transcription factor in positive modulation of abiotic stress tolerance. [PMID: 25063324]

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc11g017470.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC453999	0.0	Solanum lycopersicum cultivar Ailsa Craig NAC4 domain protein mRNA, complete cds

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001265908.1	0.0	NAC domain-containing protein 2-like
Swissprot	Q39013	1e-130	NAC2_ARATH; NAC domain-containing protein 2
TrEMBL	K4D6Q0	0.0	K4D6Q0_SOLLC; NAC4 domain protein
STRING	Solyc11g017470.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1239	24	81
Representative plant	OGRP17	15	800

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01720.1	1e-133	NAC family protein

Link Out ? help Back to Top
Phytozome	Solyc11g017470.1.1
Entrez Gene	101267475

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Florentin A,Damri M,Grafi G Stress induces plant somatic cells to acquire some features of stem cells accompanied by selective chromatin reorganization. Dev. Dyn., 2013. 242(10): p. 1121-33 [PMID:23798027] Jensen MK, et al. ATAF1 transcription factor directly regulates abscisic acid biosynthetic gene NCED3 in Arabidopsis thaliana. FEBS Open Bio, 2013. 3: p. 321-7 [PMID:23951554] Wang YX Characterization of a novel Medicago sativa NAC transcription factor gene involved in response to drought stress. Mol. Biol. Rep., 2013. 40(11): p. 6451-8 [PMID:24057250] Zhu M, et al. A new tomato NAC (NAM/ATAF1/2/CUC2) transcription factor, SlNAC4, functions as a positive regulator of fruit ripening and carotenoid accumulation. Plant Cell Physiol., 2014. 55(1): p. 119-35 [PMID:24265273] Zhu M, et al. The abiotic stress-responsive NAC-type transcription factor SlNAC4 regulates salt and drought tolerance and stress-related genes in tomato (Solanum lycopersicum). Plant Cell Rep., 2014. 33(11): p. 1851-63 [PMID:25063324] Yang X, et al. Overexpression of a Miscanthus lutarioriparius NAC gene MlNAC5 confers enhanced drought and cold tolerance in Arabidopsis. Plant Cell Rep., 2015. 34(6): p. 943-58 [PMID:25666276] Du Q,Wang H The role of HD-ZIP III transcription factors and miR165/166 in vascular development and secondary cell wall formation. Plant Signal Behav, 2015. 10(10): p. e1078955 [PMID:26340415] Takasaki H, et al. SNAC-As, stress-responsive NAC transcription factors, mediate ABA-inducible leaf senescence. Plant J., 2015. 84(6): p. 1114-23 [PMID:26518251] Liu Y,Sun J,Wu Y Arabidopsis ATAF1 enhances the tolerance to salt stress and ABA in transgenic rice. J. Plant Res., 2016. 129(5): p. 955-962 [PMID:27216423] Ghandchi FP,Caetano-Anolles G,Clough SJ,Ort DR Investigating the Control of Chlorophyll Degradation by Genomic Correlation Mining. PLoS ONE, 2016. 11(9): p. e0162327 [PMID:27618630] Zhao J,Missihoun TD,Bartels D The ATAF1 transcription factor is a key regulator of aldehyde dehydrogenase 7B4 (ALDH7B4) gene expression in Arabidopsis thaliana. Planta, 2018. 248(4): p. 1017-1027 [PMID:30027414]