PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc11g017100.1.1 | ||||||||
Common Name | LOC101262278 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | GRAS | ||||||||
Protein Properties | Length: 477aa MW: 54677.7 Da PI: 6.5117 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 270 | 7.9e-83 | 91 | 472 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 l++ Ll A+ +++++++la + L +l ++++ gd++qR+aayf+ +L arl+ s y+ + +t+ +ee+ a++ f++vsP++ Solyc11g017100.1.1 91 LIHSLLISATSIDENSMNLAIENLHELYQNVTLFGDSIQRMAAYFADGLIARLLTRKSPFYDMIMKPPTQ----EEEFLAFTQFYKVSPFY 177 57899999***********************************************999999988766665....688889999******** PP GRAS 92 kfshltaNqaIleavege.....ervHiiDf.disqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeel.g 173 +f+h+t NqaIle +e+e +H+iDf dis+G+QWp+L+q+L++ + + sl+iTg g+ +el+et+ rL +fA+ + + Solyc11g017100.1.1 178 QFAHFTSNQAILEVFEKEleynnGLLHVIDFfDISYGFQWPSLIQSLSENSttLNRISLKITGYGR----TIDELRETETRLVSFAKGFrN 264 *****************998887889****55****************999545566*********....99***************9758 PP GRAS 174 vpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe.adhnsesFlerflealey 263 ++fef+ + l+ +l++L +++E+la+nl+++l +l + s+++++Lk v +l P +v++veqe ++ +++F+ rf+++l+y Solyc11g017100.1.1 265 LSFEFQGV----LSGYKLSNLTKRKNETLAINLIFHLNSLS-----TYSKISKTLKEVHDLCPSIVTIVEQEgCKIPKTNFMPRFMDSLHY 346 *******8....89999******************999997.....3344568*******************7777*************** PP GRAS 264 ysalfdsleaklpreseerikvErellgreivnvvacegae..rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve 352 ++a+fdsl+ lp +s er ++E+ lg+ei+nv+ +++ + ++e++e+ + r+e+ GF vpls k+ +qakll++ + +++ Solyc11g017100.1.1 347 FAAMFDSLDDCLPIDSIERLSIEKNHLGKEIKNVLNYDNSSsrYNDDNEQMETCKGRMESHGFIGVPLSCKNIMQAKLLMKIRSYSNSTIQ 437 ***********************************9887763135789*******************************987774446666 PP GRAS 353 ..............eesgslvlgWkdrpLvsvSaW 373 e+ ++ l W+dr++v++SaW Solyc11g017100.1.1 438 idgginggfrvfeiEDPRAISLAWQDRSIVTASAW 472 446666665555655566777************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 41.266 | 65 | 439 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.7E-80 | 91 | 472 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 477 aa Download sequence Send to blast |
MGDIVDHEEE LLSLRLAIVN DSSCCDNHIN KKIIKKRKRR ELMMNFINTW DLNESNCEGK 60 ILSLLELREM MLKNDVKKKG HIINDGKGLH LIHSLLISAT SIDENSMNLA IENLHELYQN 120 VTLFGDSIQR MAAYFADGLI ARLLTRKSPF YDMIMKPPTQ EEEFLAFTQF YKVSPFYQFA 180 HFTSNQAILE VFEKELEYNN GLLHVIDFFD ISYGFQWPSL IQSLSENSTT LNRISLKITG 240 YGRTIDELRE TETRLVSFAK GFRNLSFEFQ GVLSGYKLSN LTKRKNETLA INLIFHLNSL 300 STYSKISKTL KEVHDLCPSI VTIVEQEGCK IPKTNFMPRF MDSLHYFAAM FDSLDDCLPI 360 DSIERLSIEK NHLGKEIKNV LNYDNSSSRY NDDNEQMETC KGRMESHGFI GVPLSCKNIM 420 QAKLLMKIRS YSNSTIQIDG GINGGFRVFE IEDPRAISLA WQDRSIVTAS AWHCVL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 1e-46 | 99 | 472 | 27 | 378 | Protein SCARECROW |
5b3h_A | 1e-46 | 99 | 472 | 26 | 377 | Protein SCARECROW |
5b3h_D | 1e-46 | 99 | 472 | 26 | 377 | Protein SCARECROW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 34 | 39 | KKRKRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc11g017100.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC171734 | 0.0 | Solanum lycopersicum chromosome 11 clone C11HBa0064J13, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004250586.1 | 0.0 | scarecrow-like protein 23 | ||||
TrEMBL | A0A3Q7JK87 | 0.0 | A0A3Q7JK87_SOLLC; Uncharacterized protein | ||||
STRING | Solyc11g017100.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12354 | 18 | 23 | Representative plant | OGRP8196 | 11 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G04890.1 | 5e-49 | SCARECROW-like 21 |
Link Out ? help Back to Top | |
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Phytozome | Solyc11g017100.1.1 |
Entrez Gene | 101262278 |
Publications ? help Back to Top | |||
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