PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc11g013620.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB_related | ||||||||
Protein Properties | Length: 254aa MW: 28748.2 Da PI: 8.3602 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40.9 | 4.7e-13 | 98 | 143 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +rWT++E+ ++++ +G+g+W+ Ia+ + Rt+ q+ s+ qky Solyc11g013620.1.1 98 NRWTEDEQRAFLKGLDFHGKGNWTNIAKDFVPSRTPTQVASHAQKY 143 69*****************************9*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.926 | 91 | 148 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-11 | 92 | 144 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.13E-15 | 94 | 147 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 7.4E-14 | 95 | 146 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 4.0E-11 | 96 | 146 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.1E-11 | 98 | 143 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.41E-11 | 99 | 144 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MLYLLIDGCF KGLSKNYRFL ILFAFFLVML NCSTVIMLTM QVEAVAIYCI CCIVCVFGCI 60 SWSIDSRCAG KIWSFSLDRS CRCSAVCVCL NQMIKKGNRW TEDEQRAFLK GLDFHGKGNW 120 TNIAKDFVPS RTPTQVASHA QKYFVRLLDA NSNSNERKKK RKKSSVFDLR IEKTEDTDQA 180 MVPLGNNQET HNVPNYMMKS VPTVMPLTWV YIYPYNDHYA STSISTTTFD KPISGISCSS 240 SSSSEDDNLE LKL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 156 | 162 | RKKKRKK |
2 | 158 | 162 | KKRKK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.23477 | 9e-81 | cell culture| fruit |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc11g013620.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC247135 | 0.0 | Solanum lycopersicum strain Heinz 1706 chromosome 11 clone slm-6o7 map 11, complete sequence | |||
GenBank | AC254057 | 0.0 | Solanum lycopersicum strain Heinz 1706 chromosome 11 clone sle-28f9 map 11, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015057414.1 | 1e-101 | probable transcription factor At5g61620 | ||||
TrEMBL | M1CNS8 | 5e-87 | M1CNS8_SOLTU; Uncharacterized protein | ||||
STRING | Solyc11g013620.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7454 | 12 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 1e-20 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc11g013620.1.1 |
Publications ? help Back to Top | |||
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