PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc11g013560.1.1 | ||||||||
Common Name | LOC104644545 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB_related | ||||||||
Protein Properties | Length: 207aa MW: 23114.1 Da PI: 9.7382 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.4 | 3.4e-13 | 53 | 98 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +rWT++E+ ++++ +G+g+W+ Ia+ + Rt+ q+ s+ qky Solyc11g013560.1.1 53 NRWTEDEQRAFLKGLDFHGKGNWTNIAKDFVPSRTPTQVASHAQKY 98 69*****************************9*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.372 | 47 | 103 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.24E-15 | 49 | 103 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.2E-14 | 50 | 101 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 2.5E-11 | 51 | 97 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.0E-11 | 51 | 101 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.3E-11 | 53 | 98 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.00E-11 | 54 | 99 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MARNCSEDEK IIKLFGFDIT TATTTITMTT TSSAATVISE KDFMGKKMIK KGNRWTEDEQ 60 RAFLKGLDFH GKGNWTNIAK DFVPSRTPTQ VASHAQKYFV RLSDANSNSN ERKKKRKKSS 120 VFDLRIEKTE DTDQAMVPLG NNQATHNVAN YMMKSVPTVM PLTWVYIYPN SYHHASTSIS 180 TTTLDKPISG ISSSSSSEDD ILELKL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 111 | 117 | RKKKRKK |
2 | 113 | 117 | KKRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc11g013560.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC247135 | 0.0 | Solanum lycopersicum strain Heinz 1706 chromosome 11 clone slm-6o7 map 11, complete sequence | |||
GenBank | AC254057 | 0.0 | Solanum lycopersicum strain Heinz 1706 chromosome 11 clone sle-28f9 map 11, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010312911.1 | 1e-153 | transcription factor SRM1-like | ||||
TrEMBL | M1CNS8 | 2e-86 | M1CNS8_SOLTU; Uncharacterized protein | ||||
STRING | Solyc11g013560.1.1 | 1e-152 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7454 | 12 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 4e-20 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc11g013560.1.1 |
Entrez Gene | 104644545 |
Publications ? help Back to Top | |||
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