PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc11g013150.1.1
Common NameLOC101251144
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GRAS
Protein Properties Length: 488aa    MW: 54335.3 Da    PI: 5.5679
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc11g013150.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS337.52.4e-1031044811374
                GRAS   1 lvelLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                         lv+lL+++Aea++  +++  la+ +L rl+elasp+g ++m+Rlaayft AL+a +a+ + ++ + ++p+ ++e+++ ++laa++l++++s
  Solyc11g013150.1.1 104 LVHLLMAAAEALTGVNKSreLARVILVRLKELASPNGaTNMERLAAYFTDALQALMASGTLHTKHMFSPNYKDEHRQGDVLAAFQLLQDMS 194
                         68***********85554449****************99*******************999***********9999*************** PP

                GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg..skeeleetgerLakfAeelgvp 175
                         P++kf+h+taNqaI e+v +++rvHiiD+di++G+QW++L+qaL sR++gpp  +lRiT+++++ sg  s  +++etg+rL+ fA+++g p
  Solyc11g013150.1.1 195 PFVKFGHFTANQAIFESVTHDRRVHIIDYDIMEGIQWASLMQALVSRKDGPPtpHLRITALSRSGSGrrSFGTVQETGRRLTAFAASIGQP 285
                         ************************************************776556*********888899999******************* PP

                GRAS 176 fefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..nsesFlerflealeyy 264
                         f+f+    ++ e +++ + ++ +gEal++n++l+l ++  +  ++     ++L+  k+l+P++v++ve+e+    ++e F+ rf+++l++y
  Solyc11g013150.1.1 286 FSFHHCRLDSDEIFKPTNVKLVRGEALIINCMLHLPHFSYRASDS---VASFLSGSKTLNPRLVTLVEEELRPigDEEGFVGRFMDTLHHY 373
                         *****99999999************************98554444...459*******************987767889************ PP

                GRAS 265 salfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee. 354
                         sal+dslea++p +s++r+ vEr++lg++i+  +a   ++r e ++   +W e+l+ +GF + ++s  + +qaklll  ++ dgyr+ee  
  Solyc11g013150.1.1 374 SALYDSLEAGFPLQSRARALVERVFLGPRITGSLARIYRARGEGER--CSWGEWLSGVGFCESNISFANHCQAKLLLGLFN-DGYRMEEIg 461
                         ****************************************877766..89*******************************.******975 PP

                GRAS 355 sgslvlgWkdrpLvsvSaWr 374
                          + lvlgWk+r+L+s+S W+
  Solyc11g013150.1.1 462 TNKLVLGWKSRRLLSASIWT 481
                         8999***************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098550.97678461IPR005202Transcription factor GRAS
PfamPF035148.1E-101104481IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MAMMVDETIT DFDCYGSLSI ATTTITTTTA TTSSSSWNDW SPVFDWDVFS GGDNFQDLIE  60
SMVQGSGNCF YKSEHQDCAE FMEEEEESGD SNNNQSEDIN GLKLVHLLMA AAEALTGVNK  120
SRELARVILV RLKELASPNG ATNMERLAAY FTDALQALMA SGTLHTKHMF SPNYKDEHRQ  180
GDVLAAFQLL QDMSPFVKFG HFTANQAIFE SVTHDRRVHI IDYDIMEGIQ WASLMQALVS  240
RKDGPPTPHL RITALSRSGS GRRSFGTVQE TGRRLTAFAA SIGQPFSFHH CRLDSDEIFK  300
PTNVKLVRGE ALIINCMLHL PHFSYRASDS VASFLSGSKT LNPRLVTLVE EELRPIGDEE  360
GFVGRFMDTL HHYSALYDSL EAGFPLQSRA RALVERVFLG PRITGSLARI YRARGEGERC  420
SWGEWLSGVG FCESNISFAN HCQAKLLLGL FNDGYRMEEI GTNKLVLGWK SRRLLSASIW  480
TTMDIDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-59934817378Protein SCARECROW
5b3h_D3e-59934817378Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.237430.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots and leaves. {ECO:0000269|PubMed:15961668}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc11g013150.1.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004250334.10.0nodulation-signaling pathway 2 protein
SwissprotQ5NE240.0NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLA0A3Q7ITG80.0A0A3Q7ITG8_SOLLC; Uncharacterized protein
STRINGSolyc11g013150.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA122411923
Representative plantOGRP68391319
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-154GRAS family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]