PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Solyc11g013150.1.1 | ||||||||
Common Name | LOC101251144 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 488aa MW: 54335.3 Da PI: 5.5679 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 337.5 | 2.4e-103 | 104 | 481 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 lv+lL+++Aea++ +++ la+ +L rl+elasp+g ++m+Rlaayft AL+a +a+ + ++ + ++p+ ++e+++ ++laa++l++++s Solyc11g013150.1.1 104 LVHLLMAAAEALTGVNKSreLARVILVRLKELASPNGaTNMERLAAYFTDALQALMASGTLHTKHMFSPNYKDEHRQGDVLAAFQLLQDMS 194 68***********85554449****************99*******************999***********9999*************** PP GRAS 89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg..skeeleetgerLakfAeelgvp 175 P++kf+h+taNqaI e+v +++rvHiiD+di++G+QW++L+qaL sR++gpp +lRiT+++++ sg s +++etg+rL+ fA+++g p Solyc11g013150.1.1 195 PFVKFGHFTANQAIFESVTHDRRVHIIDYDIMEGIQWASLMQALVSRKDGPPtpHLRITALSRSGSGrrSFGTVQETGRRLTAFAASIGQP 285 ************************************************776556*********888899999******************* PP GRAS 176 fefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..nsesFlerflealeyy 264 f+f+ ++ e +++ + ++ +gEal++n++l+l ++ + ++ ++L+ k+l+P++v++ve+e+ ++e F+ rf+++l++y Solyc11g013150.1.1 286 FSFHHCRLDSDEIFKPTNVKLVRGEALIINCMLHLPHFSYRASDS---VASFLSGSKTLNPRLVTLVEEELRPigDEEGFVGRFMDTLHHY 373 *****99999999************************98554444...459*******************987767889************ PP GRAS 265 salfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee. 354 sal+dslea++p +s++r+ vEr++lg++i+ +a ++r e ++ +W e+l+ +GF + ++s + +qaklll ++ dgyr+ee Solyc11g013150.1.1 374 SALYDSLEAGFPLQSRARALVERVFLGPRITGSLARIYRARGEGER--CSWGEWLSGVGFCESNISFANHCQAKLLLGLFN-DGYRMEEIg 461 ****************************************877766..89*******************************.******975 PP GRAS 355 sgslvlgWkdrpLvsvSaWr 374 + lvlgWk+r+L+s+S W+ Solyc11g013150.1.1 462 TNKLVLGWKSRRLLSASIWT 481 8999***************6 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 50.976 | 78 | 461 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 8.1E-101 | 104 | 481 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 488 aa Download sequence Send to blast |
MAMMVDETIT DFDCYGSLSI ATTTITTTTA TTSSSSWNDW SPVFDWDVFS GGDNFQDLIE 60 SMVQGSGNCF YKSEHQDCAE FMEEEEESGD SNNNQSEDIN GLKLVHLLMA AAEALTGVNK 120 SRELARVILV RLKELASPNG ATNMERLAAY FTDALQALMA SGTLHTKHMF SPNYKDEHRQ 180 GDVLAAFQLL QDMSPFVKFG HFTANQAIFE SVTHDRRVHI IDYDIMEGIQ WASLMQALVS 240 RKDGPPTPHL RITALSRSGS GRRSFGTVQE TGRRLTAFAA SIGQPFSFHH CRLDSDEIFK 300 PTNVKLVRGE ALIINCMLHL PHFSYRASDS VASFLSGSKT LNPRLVTLVE EELRPIGDEE 360 GFVGRFMDTL HHYSALYDSL EAGFPLQSRA RALVERVFLG PRITGSLARI YRARGEGERC 420 SWGEWLSGVG FCESNISFAN HCQAKLLLGL FNDGYRMEEI GTNKLVLGWK SRRLLSASIW 480 TTMDIDL* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 3e-59 | 93 | 481 | 7 | 378 | Protein SCARECROW |
5b3h_D | 3e-59 | 93 | 481 | 7 | 378 | Protein SCARECROW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Les.23743 | 0.0 | leaf |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, shoots and leaves. {ECO:0000269|PubMed:15961668}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Solyc11g013150.1.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004250334.1 | 0.0 | nodulation-signaling pathway 2 protein | ||||
Swissprot | Q5NE24 | 0.0 | NSP2_MEDTR; Nodulation-signaling pathway 2 protein | ||||
TrEMBL | A0A3Q7ITG8 | 0.0 | A0A3Q7ITG8_SOLLC; Uncharacterized protein | ||||
STRING | Solyc11g013150.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12241 | 19 | 23 | Representative plant | OGRP6839 | 13 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G08250.1 | 1e-154 | GRAS family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Solyc11g013150.1.1 |
Entrez Gene | 101251144 |
Publications ? help Back to Top | |||
---|---|---|---|
|