PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc11g012720.1.1

Common Name

LOC101251840

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Trihelix

Protein Properties

Length: 405aa MW: 45816.7 Da PI: 5.2114

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc11g012720.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	77.5	2e-24	292	375	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k ev+aL+ +r+++++++ +g +k+ Weev++ +++ g+ r++k+Ckekwen+nk+yk++ ++ k r +++ ++cpyf++l+ Solyc11g012720.1.1 292 RWPKLEVQALVSVRTRLDHKFLKG-AKGSVWEEVADGLAKMGYIRTAKKCKEKWENINKYYKRTIDSGKTR-PKNYRSCPYFHELD 375 8********************9.99**************************************98.888899****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.166	285	348	IPR017877	Myb-like domain
Pfam	PF13837	5.8E-20	291	377	No hit	No description
CDD	cd12203	2.77E-20	291	354	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence Send to blast
MEPLIDGDGH PPNDITSFAD NLAPFPESTN VVYENPSAVI APPGIHRLPV SPVRKLRPVR 60 FGNGRNYVDM VDSNCDIDEA LMTCTSDLGF LSQFSAQNAS TVLPMECGFV NSLDENGVAK 120 CSEVGISAVQ QMKSELDADC FNLISQSRIL ETEFSSSSDS ESSEPIEEHL NRKRKRGTRK 180 SLKLSLEDMV KKLMDKQEQM HKQLIEMLEK KEEERIIREE AWKQQEVERA KRDVELRAEE 240 TSRNLALIAF LENLLGEDFQ IPKSSEVTSL VKDEGEVHGQ EADIRSDPCN RRWPKLEVQA 300 LVSVRTRLDH KFLKGAKGSV WEEVADGLAK MGYIRTAKKC KEKWENINKY YKRTIDSGKT 360 RPKNYRSCPY FHELDSLYKN GLLNQGAGNC VKIETENKNV DPEE*

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence Send to blast

MEPLIDGDGH PPNDITSFAD NLAPFPESTN VVYENPSAVI APPGIHRLPV SPVRKLRPVR  60
FGNGRNYVDM VDSNCDIDEA LMTCTSDLGF LSQFSAQNAS TVLPMECGFV NSLDENGVAK  120
CSEVGISAVQ QMKSELDADC FNLISQSRIL ETEFSSSSDS ESSEPIEEHL NRKRKRGTRK  180
SLKLSLEDMV KKLMDKQEQM HKQLIEMLEK KEEERIIREE AWKQQEVERA KRDVELRAEE  240
TSRNLALIAF LENLLGEDFQ IPKSSEVTSL VKDEGEVHGQ EADIRSDPCN RRWPKLEVQA  300
LVSVRTRLDH KFLKGAKGSV WEEVADGLAK MGYIRTAKKC KEKWENINKY YKRTIDSGKT  360
RPKNYRSCPY FHELDSLYKN GLLNQGAGNC VKIETENKNV DPEE*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00552	DAP	Transfer from AT5G47660	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc11g012720.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004250561.1	0.0	trihelix transcription factor GT-2
TrEMBL	A0A3Q7JJS7	0.0	A0A3Q7JJS7_SOLLC; Uncharacterized protein
STRING	Solyc11g012720.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12884	16	20
Representative plant	OGRP11301	5	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47660.1	2e-44	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Solyc11g012720.1.1
Entrez Gene	101251840

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]