PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc11g011890.1.1 | ||||||||
Common Name | LOC101247682 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | C2H2 | ||||||||
Protein Properties | Length: 247aa MW: 27218.4 Da PI: 6.3928 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.3 | 0.0011 | 95 | 117 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C + F ++ L H++ H Solyc11g011890.1.1 95 FSCNFCQRKFYSSQALGGHQNAH 117 89*****************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.74E-6 | 93 | 122 | No hit | No description |
PROSITE profile | PS50157 | 11.24 | 95 | 122 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 97 | 117 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MQTPRFNLEV EALFEDDSDI TSQVASNICV GETFTDPPKN RVIDFTQLSS EHVSLDLSLS 60 QDSIGGFSVS STSESSNELA TTQTSVSGPG FQRVFSCNFC QRKFYSSQAL GGHQNAHKRE 120 RTLAKRAMRM GVFSERYANL ASLPLHGSTI RSLGIKAHAS LHQMSAPAIR PLDFKTSARF 180 EYGNRQSPPL YMENDDQLVL WPGSFRQVTN PGTSHTNFSL DGCSNMTLTP YVEKDEPIAP 240 DLTLRL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269|PubMed:24808098}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc11g011890.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC244957 | 1e-06 | Solanum lycopersicum strain Heinz 1706 chromosome 10 clone sle-1i2 map 10, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004250235.1 | 0.0 | zinc finger protein 4 | ||||
Refseq | XP_019066390.1 | 0.0 | zinc finger protein 4 | ||||
Swissprot | Q39263 | 1e-37 | ZFP4_ARATH; Zinc finger protein 4 | ||||
TrEMBL | A0A3Q7JJE0 | 0.0 | A0A3Q7JJE0_SOLLC; Uncharacterized protein | ||||
STRING | Solyc11g011890.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1283 | 23 | 47 | Representative plant | OGRP82 | 15 | 137 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66140.1 | 7e-40 | zinc finger protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Solyc11g011890.1.1 |
Entrez Gene | 101247682 |